Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0474
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 56 2e-08
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 52 3e-07
06_03_0232 - 18507872-18508792 30 1.1
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 29 2.0
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 2.0
08_01_0914 + 9010613-9013316,9013537-9013748 29 2.6
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 29 3.4
06_03_0219 - 18227559-18227858,18227864-18228340 29 3.4
12_02_1046 + 25662715-25662884,25663163-25663757 28 4.6
10_08_0974 + 21969713-21971914 28 6.0
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750... 28 6.0
03_02_0816 + 11487811-11488708,11488835-11489235 27 8.0
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +2
Query: 290 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAA 439
S + FL+G+SS Y+E + AW ADP+SV SWD FFRN A P +A
Sbjct: 46 SRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSA 95
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 290 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 409
S + FL+G+SS Y+E + AW ADP SV SWD FFRN
Sbjct: 54 SRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDNFFRN 93
>06_03_0232 - 18507872-18508792
Length = 306
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 449 PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKI 559
PP+ +P VP TS SS PS S+ SPI + +
Sbjct: 146 PPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKAL 182
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 410 ATNGAQPGAAYTP--PPNLAPYNKNEVPLTSLVPSSGGMPSIS 532
AT G+ G P PP+LA + PL+ L+ S+G +PS+S
Sbjct: 479 ATAGSGRGKQSVPSVPPDLAGGTRRTRPLSLLIHSNGVVPSLS 521
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 288 LFSLLAFTETAAVCGLFRSHDANLSLWPDLEMLNTILARCM 166
L L A + CGLF HD +W L +L++IL CM
Sbjct: 3232 LADLEALDHMLSACGLFPYHDHCFFVW-KLSLLDSILDLCM 3271
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 242 KPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNG 421
K Q + +S+ + L TA+ +NG + + + + DP V +SWDA N TN
Sbjct: 4 KWQLSMLSLLTHALLLLTASSQTINGDDLSALMSFKSLIRNDPRGVLSSWDA-IGNGTNM 62
Query: 422 AQP 430
P
Sbjct: 63 TAP 65
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 410 ATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSG 514
A N P A PPP++AP + P T+ P+ G
Sbjct: 88 AGNPPTPAQAGAPPPSIAPGTGSPPPATTTPPAPG 122
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 291 PPRRNPSLMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 449
PPRR PS + +SR + +P+ LG+ ++ +S+ H RR
Sbjct: 118 PPRRRPSRFSAPAASSRLSRLARAPSGRAVFSLGLAATSSPSPSVSRGKHRRR 170
>12_02_1046 + 25662715-25662884,25663163-25663757
Length = 254
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -1
Query: 437 RRLAELRLSHCGKMHPKTRVRSLGRRAMH 351
RRLAEL LS C P+ R+R++ R A+H
Sbjct: 56 RRLAELSLSSC---CPRLRLRAVRRLALH 81
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 365 DPNSVHAS-WDAFFRNATNGAQPGAAYTPPPNLAPY 469
DP ++ AS W + FR QP AA PPP+L+P+
Sbjct: 67 DPVAITASLWVSSFR-----PQPTAAAPPPPSLSPF 97
>02_02_0179 +
7500647-7500779,7503021-7503222,7503356-7503427,
7503655-7503726,7504212-7504283,7504711-7504782,
7505045-7505116,7505209-7505280,7505688-7505759,
7506215-7506292,7506670-7506729,7506810-7506848,
7506949-7506998,7507110-7507480,7508467-7508662,
7508856-7508936,7509694-7509848,7510302-7510512,
7510648-7510882,7510995-7511145,7511813-7512181
Length = 944
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 64 KGEN*LNLDWTARPSFCSNSVKGL--THQGVTTNNNHASSKDS 186
+G++ L LDW R + C + KGL H+ T H K S
Sbjct: 695 RGDHQLKLDWPKRYNICLGTAKGLCYLHEESTLKIIHRDIKPS 737
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 404 RNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMP 523
R A P TPP P+ + +VP+ + PSS G P
Sbjct: 46 RLTAKNAAPPVVCTPPSPPPPF-RQKVPVATYSPSSQGQP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,151
Number of Sequences: 37544
Number of extensions: 365539
Number of successful extensions: 1258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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