Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0474
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)                 87   1e-17
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             36   0.023
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)                 31   0.66 
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         31   0.88 
SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                29   3.5  
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)                   28   4.7  
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   28   6.2  
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)               27   8.2  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   27   8.2  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   27   8.2  

>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
          Length = 406

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/90 (47%), Positives = 55/90 (61%)
 Frame = +2

Query: 266 VNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYT 445
           V   +  +  A EPFL+GSSS YVE MY +WL DP SVH SWDA+FRN + G  PG AY 
Sbjct: 7   VRPQQAAAVVAKEPFLSGSSSNYVEEMYASWLEDPKSVHRSWDAYFRNVSLGKSPGQAYY 66

Query: 446 PPPNLAPYNKNEVPLTSLVPSSGGMPSISA 535
           PPP L       V + + +PS+    +I+A
Sbjct: 67  PPPVLG----KPVAVATAMPSAVDQSNITA 92


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 270 MPTG*RAPPRRNPSLMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 449
           +P G ++PP  +P L +P+    R     GSP+  P  R   + S  R +  SQ+P    
Sbjct: 256 IPDGTQSPPPSSPFLQSPMTSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPSSQSPQDFH 315

Query: 450 RP 455
           +P
Sbjct: 316 QP 317


>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
          Length = 694

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +2

Query: 212 SERFASWLLNKPQTAAVSVN-ANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHAS 388
           + R   + LN+   A +S N A RL ++ ++ P +  S       + N  +  P+  H  
Sbjct: 34  AHRSLKFTLNRSMIARLSDNRAPRLGTNNSSYPGIRASWE-----INNKMVDSPSDFHHD 88

Query: 389 WDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISA 535
           W    R A +    G A + PP   P   ++ P   LVP +   P ++A
Sbjct: 89  W----RRALDSLHQGHAPSRPPTPDPQPTHQNPSPGLVPIAIRDPDLTA 133


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 499 ERCERDLILVVWREIGRRRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLD 335
           E C + + ++  R+ GR  VCG +  SVC+  E   P  +  V VG   +  G D
Sbjct: 355 ETCGKRVDMIATRKEGREHVCGEYKCSVCK--EVVPPDHLCYVTVGADALPKGGD 407


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 443 TPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPI 547
           TPPPN      +   LTSLVP+ G      AGS +
Sbjct: 386 TPPPNTVAGQTSAYQLTSLVPTQGTQVLSDAGSNV 420


>SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 398 FFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGM 520
           F R+  +  +P    +PPP   P   +  P  SL P++GGM
Sbjct: 35  FPRHQASFTEPSPDSSPPPPRTPVAPSTSPAVSLGPAAGGM 75


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 422 AQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISA 535
           +QPG  Y PPP L   +K   P  SL   S  +P IS+
Sbjct: 452 SQPGYKYRPPPRL---DKGHTPNLSLYLQSFFLPKISS 486


>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
          Length = 677

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 410 ATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINE 553
           AT    P   YTP P      ++ VPL  + P+ G +P+ +  SP  E
Sbjct: 234 ATPTHSPLRLYTPSPAGRSQLQSPVPLRLMSPALGQVPATNTRSPFLE 281


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 490 ERDLILVVWREIGRRRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLDVS*TGA 317
           E  ++  V +E  R  +  AW++      EK   R   G  + EPC++   D+  TGA
Sbjct: 161 ESKMVFSVIKEWSREHLVEAWMTDAKAACEKAGVRLPEGCCLQEPCMICSDDL--TGA 216


>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +2

Query: 206  GQSERFASWLLNKPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHA 385
            GQSE+    + ++ Q A+  V       S A     +G S   ++ +    LA+ + +H+
Sbjct: 886  GQSEQNVREVFSRAQAASPCVIFFDELDSLAPNRGRSGDSGGVMDRVVAQLLAELDGLHS 945

Query: 386  SWDAFFRNATN 418
            + D F   ATN
Sbjct: 946  TCDVFVIGATN 956


>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 893

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 565 VDYLLVYRGTC*NRRHSAARWHERCERDLILVVWREIGRRRVCGAWLSSVCRI 407
           V+Y   YRG    +    +R H R E  ++  + R   +R   G W  S+ R+
Sbjct: 143 VEYHSFYRGKTEYQAIEESRTHARPEPKIVRTLSRRYSKRSDSGTWSRSLRRL 195


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 443 TPPPNLAPYNKNEVPLTSLVP 505
           TPPP  AP  K  +PLT + P
Sbjct: 250 TPPPKPAPSLKTTIPLTDVPP 270


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 437  RRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSRRKL--NWSH*GRVPPRWS 288
            RR++      CG++ P      LG R +  +W+RR +   W+  G  P  W+
Sbjct: 1438 RRVSGNGGQRCGRIQPPILSDILGPRNIATSWARRVMGPEWNVSGLRPSTWN 1489


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,257
Number of Sequences: 59808
Number of extensions: 392113
Number of successful extensions: 2697
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2697
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)