Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0474
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 52  KISIKGEN*LNLDWTARPSFCSNSVKGLTHQ 144
           +I +KG+  +   W  +    S+S KG+T Q
Sbjct: 581 EIEVKGKGIMKTYWLEKREHRSSSTKGITIQ 611


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 561 IIFSFIGEPAEIEGIPPLDGTSDVSGTSFLLY 466
           +IFS +G  A  +  P  D  +   G +FL+Y
Sbjct: 385 VIFSVVGFMAHEQQKPVADVAASGPGLAFLVY 416


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +3

Query: 291 PPRRNPSLMAPVQL--TSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRRRP 455
           PP++NP +  PV    T+    ++     TP T  GM +      E +   H   +P
Sbjct: 822 PPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPST--GMMYKPFLIPEQTSISHENNQP 876


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 443 TPPPNLAPYNKNEVPLTSLVPSSGGMPSIS 532
           TP  ++   +   VP+TSL  SS  + SI+
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSINSIT 870


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 561 IIFSFIGEPAEIEGIPPLDGTSDVSGTSFLLY 466
           +IFS +G  A  +  P  D      G +FL+Y
Sbjct: 332 VIFSVVGFMAHEQQKPVADVAVSGPGLAFLVY 363


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 520 HSAARWHERCERD 482
           H    +H+RC RD
Sbjct: 12  HGGLYYHQRCSRD 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,881
Number of Sequences: 438
Number of extensions: 3383
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)