Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0472
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.46 
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   0.81 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   1.9  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    25   3.3  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   4.3  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    24   7.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   10.0 
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    24   10.0 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   10.0 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    24   10.0 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    24   10.0 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   10.0 

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 181 PSKPKLAFPTGSSTDTLRKLSDDLSRKHLSDLIEAEED 294
           P K KL+  + SST +++ L  + ++KH+   I   +D
Sbjct: 856 PMKKKLSHSSASSTRSIKSLLTNANQKHIHSSINETDD 893


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 223 DTLRKLSDDLSRKHLSDLIEAEEDEVSSSL 312
           DTL +++D LSR H+S     EE + SSSL
Sbjct: 135 DTLVRINDQLSRNHISG--TTEEMQSSSSL 162


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 47  HLHHAGRHHGS-EHSEIQSQTTFSELQIED*F 139
           HLHH  +H+GS  H    +QT +S    E  F
Sbjct: 27  HLHHVPQHNGSLAHEGPTNQTDYSSRHHESQF 58


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 123 KSRTNSIIQRNFFFENHKMPVETKISFSDGQLDGH 227
           K  T+ +  R+FF E   +  E +  FSDG +  H
Sbjct: 154 KLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIH 188


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +2

Query: 5   SNSFARFQRHTRPAHLHHAGRHHGSEH 85
           S S      H     LHH G HH   H
Sbjct: 279 SGSTNHHNNHESDKDLHHEGHHHHHHH 305


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 199 LILVSTGIL*FSKKKFLWIIELVLDLKFG 113
           ++ V++G+L   K KFL I E  L L FG
Sbjct: 152 VVHVASGVLPLDKLKFLVIDEADLMLSFG 180


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +1

Query: 253 SRKHLSDLIEAEEDEVSSSLPDKPRTYRKASNHSVILTEDTDSFIIG 393
           S +++  ++E+  DE+SS+  DK    ++  +   ++     SF+ G
Sbjct: 686 SLQNVIKMLESSIDEISSASYDKDELDKETPSFEAVMIFSQISFLCG 732


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 208 TGSSTDTLRKLSDDLSRKHLSDLIEAEEDEV 300
           T SST+T       LSR+H S  +  EED+V
Sbjct: 6   TFSSTETEGFKKRLLSRRHSSYQVRDEEDDV 36


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 386  MKLSVSSVNITLWLDAL 336
            + + +S+VNI +WLD +
Sbjct: 1725 LNVGISTVNIDIWLDVI 1741


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 8  NSFARFQRHTRPAHLHHAGRHHGSEH 85
          N   R   H+R  H HH  RH  S+H
Sbjct: 16 NETDRETNHSR-RHRHHHSRHRESKH 40


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 277 IEAEEDEVSSSLPDKPRTYRKASNHSVILTED 372
           IEA + E SSS P  P T + +     + + D
Sbjct: 126 IEASQTEESSSTPPSPATKKSSKQRLTMNSRD 157


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 206 GKANFGFDGHLMIFKKKIPLDYRISPRFEVRKT 108
           G  +F F    + ++  IPL + + PRF+ R +
Sbjct: 539 GYVHFFFSIGCVAYQSFIPLPFLLGPRFKFRSS 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,116
Number of Sequences: 5004
Number of extensions: 26476
Number of successful extensions: 99
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)