Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0471
         (591 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6IFT8 Cluster: Pol polyprotein; n=1; Schistosoma manso...    32   8.7  
UniRef50_A2EN39 Cluster: Beige/BEACH domain containing protein; ...    32   8.7  

>UniRef50_Q6IFT8 Cluster: Pol polyprotein; n=1; Schistosoma
           mansoni|Rep: Pol polyprotein - Schistosoma mansoni
           (Blood fluke)
          Length = 1166

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 149 TRQFKMNKSN---YFTTVIIEDMSGLRG*VSFLRFFSFYIE*RCYVLINHIRP*NSGFKG 319
           TRQ  +N SN   Y  T II D+      + FL+ +   ++ R   LI+     NS F G
Sbjct: 148 TRQLTVNLSNRRQYLWTFIIADVPTAILGIDFLQHYELLVDSRRLQLIDTSS--NSNFMG 205

Query: 320 *IACDEGVVYEEKVQVTKVFHKINKLYHITF 412
                    +    ++T VFH  + L+H+ F
Sbjct: 206 ------SKAHTNAYRITGVFHSRDDLFHVLF 230


>UniRef50_A2EN39 Cluster: Beige/BEACH domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: Beige/BEACH domain
            containing protein - Trichomonas vaginalis G3
          Length = 2417

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 155  VESTLKPERD*WFPCLLSIAGRFICHSIYYRCSKSPPYL*D 33
            ++++ KP ++  F   +S  G+FI   ++ R SKS PYL D
Sbjct: 1516 IKNSYKPLKNKIFGLYVSFEGKFISREVFGRISKSLPYLND 1556


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,390,299
Number of Sequences: 1657284
Number of extensions: 9836015
Number of successful extensions: 16972
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16971
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)