Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0471
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...    30   1.4  
AF038606-7|AAB92021.1|  344|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF016420-9|AAB65304.1|  410|Caenorhabditis elegans Serpentine re...    27   10.0 

>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
           protein 1 protein.
          Length = 1845

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 107 ANMETISRVPVSRSTRQFKMNKSNYFTTVII 199
           ANME + R+P     RQ+K N  +Y   +++
Sbjct: 786 ANMENMPRIPKDEVRRQYKFNAEDYKDAIVM 816


>AF038606-7|AAB92021.1|  344|Caenorhabditis elegans Hypothetical
           protein C04C3.6 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 370 KSFSQN*QIVSYHLHPTPVFNLPV*LQFFFNFL*SILRPNCYYYLCSLKIGNRTALGFLI 549
           K ++   Q++ Y +    V  LP  L F F  L    + N Y++LC++  GN   L  + 
Sbjct: 20  KEWTATSQLLYYTVICVSVVTLPA-LIFMFIVLRKYKKSNYYHFLCAIMAGNFVLLATIF 78

Query: 550 CRV 558
             V
Sbjct: 79  SNV 81


>Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical
           protein T08G5.2 protein.
          Length = 728

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 391 VNFVKNFCDLYFFFVNNSFIACNL 320
           +  +K FCD Y F     F+ C+L
Sbjct: 479 IGIIKTFCDFYQFVTTKFFLPCSL 502


>AF045642-6|AAC02590.1|  632|Caenorhabditis elegans Hypothetical
           protein C17H12.12 protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 445 VTQVN*RQEWDEGDM-IQFVNFVKNFCDLYFFFVNNSFIACNLAFKP-GVLRSNMVYKH 275
           V   N  + WD  ++ +Q  + +KN  DL F F+N S  + N+  +P   LR +   +H
Sbjct: 132 VPHYNLAEFWDMPELLVQITDELKNDVDLTFRFINTS--STNIKDRPQAALRPHCTIEH 188


>AF016420-9|AAB65304.1|  410|Caenorhabditis elegans Serpentine
           receptor, class r protein6 protein.
          Length = 410

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 418 WDEGDMIQFVNFVKNFCDLYFF-FVNNSFIACNL 320
           W EG+M QF+      C L  F +  NSFI+ +L
Sbjct: 97  WAEGNMFQFMALQTIVCALCLFGWTKNSFISKHL 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,715,799
Number of Sequences: 27780
Number of extensions: 246690
Number of successful extensions: 394
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)