Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0471
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   5.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   5.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.0  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 556 RDKLKTRVRCGSLFLNYTNNSNN*ASECFIRN*KKI 449
           R+K K      SL  NY  N+NN   + +  N KK+
Sbjct: 73  REKSKEHKIISSLSNNYNYNNNN-YKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 556 RDKLKTRVRCGSLFLNYTNNSNN*ASECFIRN*KKI 449
           R+K K      SL  NY  N+NN   + +  N KK+
Sbjct: 73  REKSKEHKIISSLSNNYNYNNNN-YKKLYCNNYKKL 107


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 364 LYFFFVNNSFIACNLAFKPGVLRSNM 287
           L+F  VNNS I C    +P + R NM
Sbjct: 318 LFFGLVNNSAIGCWNEHQP-LQRQNM 342


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 205 VFNYYCREIIAFIHF 161
           V NY CR ++A + F
Sbjct: 442 VINYNCRSLVASVPF 456


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 556 RDKLKTRVRCGSLFLNYTNNSNN 488
           R++ K R    SL  NY  N+NN
Sbjct: 306 RERSKERKIISSLSNNYNYNNNN 328


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 205 VFNYYCREIIAFIHF 161
           V NY CR ++A + F
Sbjct: 410 VINYNCRSLVASVPF 424


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 523 SLFLNYTNNSNN*ASECFIRN*KKI 449
           S + NY NN NN  +  +  N KK+
Sbjct: 92  SNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 523 SLFLNYTNNSNN*ASECFIRN*KKI 449
           S + NY NN NN  +  +  N KK+
Sbjct: 92  SNYNNYNNNYNNNYNNNYNNNYKKL 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,331
Number of Sequences: 438
Number of extensions: 3434
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)