Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0471
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46350.1 68416.m05020 leucine-rich repeat protein kinase, put...    28   5.4  
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ...    27   7.1  
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ...    27   7.1  
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ...    27   7.1  

>At3g46350.1 68416.m05020 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 871

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/30 (33%), Positives = 22/30 (73%)
 Frame = +2

Query: 353 EKVQVTKVFHKINKLYHITFIPLLSLIYLC 442
           +++ +TK+ +K++ L  IT+IPL + + +C
Sbjct: 135 KRIDMTKLQNKVSTLEEITYIPLSNSLDVC 164


>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); identical to coatomer protein
           complex, beta prime (beta'-COP) protein {Arabidopsis
           thaliana} (GI:9294445); similar to Coatomer beta'
           subunit (Beta'-coat protein) (Beta'-COP) (p102)
           (SP:P35606) [Homo sapiens]
          Length = 918

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 362 QVTKVFHKINKLYHITFIPLLSLIYLCDCNFFLISYKAF*GLI 490
           +VT ++H    +Y + +I   S +YL D  F +I Y     LI
Sbjct: 551 EVTTMYHLDRPMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLI 593


>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); identical to coatomer protein
           complex, beta prime (beta'-COP) protein {Arabidopsis
           thaliana} (GI:9294445); similar to Coatomer beta'
           subunit (Beta'-coat protein) (Beta'-COP) (p102)
           (SP:P35606) [Homo sapiens]
          Length = 918

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 362 QVTKVFHKINKLYHITFIPLLSLIYLCDCNFFLISYKAF*GLI 490
           +VT ++H    +Y + +I   S +YL D  F +I Y     LI
Sbjct: 551 EVTTMYHLDRPMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLI 593


>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); identical to coatomer protein
           complex, beta prime (beta'-COP) protein {Arabidopsis
           thaliana} (GI:9294445); similar to Coatomer beta'
           subunit (Beta'-coat protein) (Beta'-COP) (p102)
           (SP:P35606) [Homo sapiens]
          Length = 909

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 362 QVTKVFHKINKLYHITFIPLLSLIYLCDCNFFLISYKAF*GLI 490
           +VT ++H    +Y + +I   S +YL D  F +I Y     LI
Sbjct: 551 EVTTMYHLDRPMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLI 593


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,798,473
Number of Sequences: 28952
Number of extensions: 221306
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)