Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0467
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   5.5  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.5  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.6  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   9.6  

>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 63  VIDVFKKPQEGTFLFF*NGNPVSQRN 140
           V+DVF  PQ GT +     +PV Q+N
Sbjct: 68  VVDVFAMPQSGTGVSVEAVDPVFQKN 93


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 163 YLVLFLPVYM*IENFSAIYTSYTIYLHYIS 252
           +L   L V M ++ F  +Y   ++YLHY+S
Sbjct: 55  WLFSVLGVLMSMDVFCILYAYPSVYLHYVS 84


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 178 LPVYM*IENFSAIYTSYTIYLHYISFCQYFF 270
           +P  + +  F    TSY I  H+I  C+++F
Sbjct: 691 IPPILRLVAFGLFITSYIIPSHHIRSCKHYF 721


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 321 MHYCSIKFSCGPSLFCRCSSILWYIYI 401
           + YCS  F  GP   C   SI  Y+ +
Sbjct: 439 LKYCSFYFFIGPICICLLGSISSYLLL 465


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 217 ILLKSFQSTYKQAKIKPGK*HFLFYLFRW 131
           ++  SF   + +++IKPG+ + + Y F W
Sbjct: 76  VMQVSFAKDWAKSRIKPGEEYPVIYPFDW 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,017
Number of Sequences: 5004
Number of extensions: 45249
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)