Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0467
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468... 31 0.45
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 28 4.2
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 27 7.4
01_06_1132 - 34769800-34769955,34770098-34770157,34770259-347703... 27 7.4
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 27 9.8
08_01_0843 - 8276619-8278991 27 9.8
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504... 27 9.8
>03_05_0603 -
26046145-26046273,26046400-26046459,26046820-26046895,
26046988-26047109,26047286-26047360,26047466-26047536,
26048102-26048129,26048625-26048738
Length = 224
Score = 31.5 bits (68), Expect = 0.45
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = +1
Query: 52 SFVLLLTFLRSPKKGLSYFFKMVTLLANETNRRENVTYLVLFLPVYM*IENFSAIYTSYT 231
++++L++ +P+ L +F L + + V +L + + IY Y
Sbjct: 120 TYMVLISETTTPEINLRWFLDTAGLKKSSAYLVNGILMFVAWLVARILL----FIYVFYH 175
Query: 232 IYLHYISFCQYFFYGYYYAT*LE*CLFIL 318
IYLHY Q +GYY + LF++
Sbjct: 176 IYLHYSQVMQMHAFGYYLTFIVPSVLFVM 204
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 357 LVHTRI*YYNNAFQNK*ALLQLCGIIVTIKKILTKAYIMQVNSVTSVYC 211
L+ + YNN + K L G+I+ + ++Y+ VN TSVYC
Sbjct: 39 LIFQHLSAYNNPEEQKFVL----GVILMVPCYAVESYVSLVNPDTSVYC 83
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 357 LVHTRI*YYNNAFQNK*ALLQLCGIIVTIKKILTKAYIMQVNSVTSVYC 211
L+ + YNN + K L G+I+ + ++Y+ +N TSVYC
Sbjct: 39 LIFEHLSAYNNPEEQKFVL----GVILMVPCYAIESYVSLINPNTSVYC 83
>01_06_1132 -
34769800-34769955,34770098-34770157,34770259-34770334,
34770412-34770533,34770634-34770708,34770899-34771025,
34771126-34771214,34773479-34773535,34773584-34773661
Length = 279
Score = 27.5 bits (58), Expect = 7.4
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = +2
Query: 161 LTWFYFCLFICRLKTFQQYTLVTLFTCII*AFVNIFFMVTIMPHSWSNAYLFWNALL*YQ 340
L+ + CL + K Y L+ LFT FVN+ + + + N YL+ N L +
Sbjct: 148 LSMYAICLALLSGKA-HMYILMVLFTEATTPFVNLRWYLEVAGKKTHNLYLY-NGLALFV 205
Query: 341 ILVWTKSLL*M*FYFMVYIH 400
+ + +L + F+ +Y H
Sbjct: 206 GWLVARVILFIYFFTHMYFH 225
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 194 RLKTFQQYTLVTLFTCII*AFVNIFFMVTIMPHSWSNAYLFWNAL 328
+L F +Y++V F CI AFV FF V +P W +W L
Sbjct: 169 KLIEFGRYSIVKAF-CI--AFVLTFFSVFDVPVFWPILLFYWVVL 210
>08_01_0843 - 8276619-8278991
Length = 790
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 330 CSIKFSCGPSLFCRCSS 380
CS+K CGP+ FC+ +S
Sbjct: 294 CSVKGVCGPNSFCQVTS 310
>06_03_0921 +
25949453-25949986,25950150-25950188,25950380-25950445,
25950526-25950669,25951416-25951612,25952281-25952443,
25952760-25952873,25953304-25953401,25953964-25954042,
25954356-25954514,25954690-25954779,25955790-25955923,
25956513-25956672,25956826-25956909,25957000-25957167,
25957321-25957446,25958088-25958225,25958311-25958414,
25958832-25958895,25959229-25959317,25959393-25959534,
25959937-25960000,25960085-25960152,25960399-25960521,
25960604-25960669,25960857-25960962,25961076-25961167,
25961243-25961344
Length = 1170
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 145 YLFRWLTGLPF*KNRKVPSWGFLKTSITKQKRECN 41
Y F W +G P R VPSW I Q ECN
Sbjct: 434 YPFCWRSGTPL-IYRAVPSWFVKVEKIRDQLLECN 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,292,771
Number of Sequences: 37544
Number of extensions: 224707
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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