Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0467
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)                       29   1.9  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_55263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)                      28   4.3  
SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 223 SYTIYLHYISFCQYFFYGYYY 285
           SY  Y HY  +  Y++Y YYY
Sbjct: 2   SYYYYYHYYYYYYYYYYYYYY 22



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 217 YTSYTIYLHYISFCQYFFYGYYY 285
           Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 6   YYHYYYYYYYYYYYYYYYYYYYY 28


>SB_59039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 202 NFSAIYTSYTIYLHYISFCQYFFYGYYY 285
           N++  Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 15  NYAYYYYYYYYYYYYYYYYYYYYYYYYY 42


>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
          Length = 296

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 217 YTSYTIYLHYISFCQYFFYGYYY 285
           Y  Y  Y HY  +  Y++Y YYY
Sbjct: 271 YYYYYYYYHYYYYYYYYYYYYYY 293



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 217 YTSYTIYLHYISFCQYFFYGYYY 285
           Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 260 YYYYYYYYYYYYYYYYYYYHYYY 282



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 217 YTSYTIYLHYISFCQYFFYGYYY 285
           Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 265 YYYYYYYYYYYYYYHYYYYYYYY 287



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 217 YTSYTIYLHYISFCQYFFYGYYY 285
           Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 268 YYYYYYYYYYYHYYYYYYYYYYY 290


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 217 YTSYTIYLHYISFCQYFFYGYYY 285
           Y  Y  Y HY  +  Y++Y YYY
Sbjct: 124 YYYYYYYHHYYYYYYYYYYYYYY 146



 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 211 AIYTSYTIYLHYISFCQYFFYGYYY 285
           A Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 102 AYYYYYYYYYYYYYYYYYYYYYYYY 126



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 118 VTLLANETNRRENVTYLVLFLPVYM*IENFSAIYTSYTIYLHYISFCQYFFYGYYY 285
           V +  + T  R+   Y   +   Y     +   Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 88  VIVKIDHTVYRQRHAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYY 143



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +1

Query: 163 YLVLFLPVYM*IENFSAIYTSYTIYLHYISFCQYFFYGYYY 285
           Y   +   Y    ++   Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 119 YYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYY 159


>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/65 (21%), Positives = 34/65 (52%)
 Frame = +1

Query: 40   SYILSFVLLLTFLRSPKKGLSYFFKMVTLLANETNRRENVTYLVLFLPVYM*IENFSAIY 219
            +Y +++++L     SP +  +  + ++ L  +  +R   VTYLVL L V+     ++ ++
Sbjct: 890  TYAVTYLVLKLSFHSPSRTYAVTYLVLKLSFHSPSRTYAVTYLVLKLSVHSPSRTYAVLF 949

Query: 220  TSYTI 234
               ++
Sbjct: 950  DKLSL 954



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +1

Query: 40   SYILSFVLLLTFLRSPKKGLSYFFKMVTLLANETNRRENVTYLVLFLPVYM*IENFSAIY 219
            +Y +++++L     SP +  +  + +  L  +  +R   VTYLVL L  +     ++  Y
Sbjct: 854  TYAVTYLVLKLSFHSPSRTYAVTYLLPKLSVHSPSRTYAVTYLVLKLSFHSPSRTYAVTY 913

Query: 220  TSYTIYLH 243
                +  H
Sbjct: 914  LVLKLSFH 921


>SB_55263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 43  YILSFVLLLTFLRSPKKGLSYFFKMVTLLANETNRRENVTYLVLFLP 183
           Y+L+ +L L +L +    LSY   M+  L+       N++YL+  LP
Sbjct: 227 YLLAILLRLLYLLAVLPNLSYLLAMLPNLSYLLAMLPNLSYLLAMLP 273


>SB_55399| Best HMM Match : C1_4 (HMM E-Value=4.8)
          Length = 335

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 202 NFSAIYTSYTIYLHYISFCQYFFYGYYY 285
           N  + Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 262 NAHSYYYYYYYYYYYYYYYYYYYYYYYY 289



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 208 SAIYTSYTIYLHYISFCQYFFYGYYY 285
           S  Y  Y  Y +Y  +  Y++Y YYY
Sbjct: 265 SYYYYYYYYYYYYYYYYYYYYYYYYY 290


>SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 229 TIYLHYISFCQYFFYGYYYA 288
           T Y +Y  +  Y++Y YYYA
Sbjct: 8   TAYYYYYYYYYYYYYYYYYA 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,732
Number of Sequences: 59808
Number of extensions: 287123
Number of successful extensions: 884
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)