Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0467
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine rece...    28   3.8  
AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm rece...    28   3.8  
Z78544-2|CAB01758.1|  368|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical ...    28   5.0  
U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U21317-9|AAA62530.3|  355|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 97  LSYFFKMVTLLANETN-RRENVTYLVLFLPVYM*IENFSAIYTSYTIYLHYISFCQYFFY 273
           LS   K++TLL N       N   + + L +YM  ++F   Y   T+YLH+   C    Y
Sbjct: 219 LSENLKVMTLLRNVVLFSGVNNFVMAIILTMYM-SKSFKVSYPLATLYLHFAFNCCVLLY 277

Query: 274 GY 279
            +
Sbjct: 278 SF 279


>AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm
           receptor protein 16 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 161 LTWFYFCLFICRLKTFQQYTLVTLFTCII*AFVNIFFMVTIMPHSWSNAYLFWNA 325
           LT  +  LF  R        L+ LF+    AF +  F++  + HS+++ Y+F+ +
Sbjct: 24  LTLIFLTLFFVRKDLGPYKYLIILFSVFGIAFASFEFVLYPVLHSYNSGYIFFTS 78


>Z78544-2|CAB01758.1|  368|Caenorhabditis elegans Hypothetical
           protein K04G11.3 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 45  HSLFCFVIDVFKKPQEGTFL 104
           H LFCF+++    P+EG FL
Sbjct: 25  HKLFCFILNHGMHPREGQFL 44


>AL117203-8|CAB55110.1|  376|Caenorhabditis elegans Hypothetical
           protein Y48C3A.11 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 226 YTIYLHYIS--FCQYFFYGYYYAT*LE*CLFILECIIVVSNSRVDQVSFVDVVLFYGI 393
           Y+ +  ++S   CQ FF+ YY AT +    F +   ++V  S V  V  + ++ F+ +
Sbjct: 74  YSTFFKFMSDQLCQPFFFSYYLATTMH---FSVTVSVLVHMSAVFHVVALSLIRFFSL 128


>U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical
           protein C05D10.3 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +1

Query: 55  FVLLLTFLRSPKKGLSYFFKMVTLLANETNRRENVTYLVLFLPVYM*IENFSAIYTSYTI 234
           F  L+T L +    +S  + + T+ AN       +T L +F+   M    F   + +   
Sbjct: 450 FASLVTILIT-NVAISISYAVATIFANTDVA---MTILPIFVVPIMAFGGFFITFDAIPS 505

Query: 235 YLHYISFCQYFFYGY 279
           Y  ++S   YF YGY
Sbjct: 506 YFKWLSSLSYFKYGY 520


>AF025465-9|AAB71020.2|  136|Caenorhabditis elegans Hypothetical
           protein K02E7.11 protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +2

Query: 158 LLTWFYFCLFICRLKTFQQYTLVTLFTCII*AFVNIFFMVTIM 286
           ++T+ YFC  I  L +    T +    C    F ++F+ + ++
Sbjct: 91  VITFIYFCKLIILLVSINMVTSILCIVCNFVNFCSVFYEIKLV 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,146
Number of Sequences: 27780
Number of extensions: 245071
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)