Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0467
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.5  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   3.5  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   3.5  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   3.5  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   3.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.2  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 319 PK*IS-ITPTMWHNSNHKKNIDKSLYN 242
           PK IS ++    HN+N+K N + + YN
Sbjct: 78  PKIISSLSNNTIHNNNYKYNYNNNNYN 104


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 319 PK*IS-ITPTMWHNSNHKKNIDKSLYN 242
           PK IS ++    HN+N+K N + + YN
Sbjct: 78  PKIISSLSNNTIHNNNYKYNYNNNNYN 104


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 319 PK*IS-ITPTMWHNSNHKKNIDKSLYN 242
           PK IS ++    HN+N+K N + + YN
Sbjct: 79  PKIISSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 319 PK*IS-ITPTMWHNSNHKKNIDKSLYN 242
           PK IS ++    HN+N+K N + + YN
Sbjct: 79  PKIISSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 319 PK*IS-ITPTMWHNSNHKKNIDKSLYN 242
           PK IS ++    HN+N+K N + + YN
Sbjct: 79  PKIISSLSNNTIHNNNYKYNYNNNNYN 105


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 319 PK*IS-ITPTMWHNSNHKKNIDKSLYN 242
           PK IS ++    HN+N+K N + + YN
Sbjct: 79  PKIISSLSNNTIHNNNYKYNYNNNNYN 105


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 49  ECNLFPRAEFLQPG 8
           +C ++ + EFL PG
Sbjct: 61  KCEIYAKCEFLNPG 74


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 182 LFICRLKTFQQYTLVTLFTCII*AF 256
           + +C L TF      T  TCI+  F
Sbjct: 561 VLVCYLNTFLLLATPTTVTCILQRF 585


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 182 LFICRLKTFQQYTLVTLFTCII*AF 256
           + +C L TF      T  TCI+  F
Sbjct: 651 VLVCYLNTFLLLATPTTVTCILQRF 675


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,686
Number of Sequences: 438
Number of extensions: 2945
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)