Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0467
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro...    28   3.5  
At1g63110.1 68414.m07130 cell division cycle protein-related con...    24   5.4  
At1g63110.3 68414.m07131 cell division cycle protein-related con...    24   5.5  
At1g63110.2 68414.m07132 cell division cycle protein-related con...    24   5.5  

>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 755

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 203 TFQQYTLVTLFTCII*AFVNIFF 271
           TF+ +TL  LF+CI+ AFVN FF
Sbjct: 55  TFRTWTL-GLFSCILLAFVNQFF 76


>At1g63110.1 68414.m07130 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 469

 Score = 24.2 bits (50), Expect(2) = 5.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 381 ILWYIYIYIAQSIMVNLYASLLIVMERVVIFLI 479
           +LW +Y+ I  ++ +N Y  L  + +R   F++
Sbjct: 271 LLWSLYVLILCALSLNKYGGLEEMFKRTYGFIL 303



 Score = 21.8 bits (44), Expect(2) = 5.4
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 489 QRFFSILLHLSYLFLVI 539
           + FF I+LH++ LF+++
Sbjct: 327 RNFFLIVLHVNILFMLL 343


>At1g63110.3 68414.m07131 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 407

 Score = 24.2 bits (50), Expect(2) = 5.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 381 ILWYIYIYIAQSIMVNLYASLLIVMERVVIFLI 479
           +LW +Y+ I  ++ +N Y  L  + +R   F++
Sbjct: 209 LLWSLYVLILCALSLNKYGGLEEMFKRTYGFIL 241



 Score = 21.8 bits (44), Expect(2) = 5.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 489 QRFFSILLHLSYLFLVI 539
           + FF I+LH++ LF+++
Sbjct: 265 RNFFLIVLHVNILFMLL 281


>At1g63110.2 68414.m07132 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 397

 Score = 24.2 bits (50), Expect(2) = 5.5
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 381 ILWYIYIYIAQSIMVNLYASLLIVMERVVIFLI 479
           +LW +Y+ I  ++ +N Y  L  + +R   F++
Sbjct: 199 LLWSLYVLILCALSLNKYGGLEEMFKRTYGFIL 231



 Score = 21.8 bits (44), Expect(2) = 5.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 489 QRFFSILLHLSYLFLVI 539
           + FF I+LH++ LF+++
Sbjct: 255 RNFFLIVLHVNILFMLL 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,470
Number of Sequences: 28952
Number of extensions: 207993
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)