Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0466
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    29   0.65 
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   2.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   4.6  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   6.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   6.1  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   8.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.0  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 455 LPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 324
           L P+K+     +E +   G   IL  D     + WNS T TP G
Sbjct: 212 LEPNKLDEGMFLEGIGAGGIGRILIADFGFSKVVWNSKTATPCG 255


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 560 LHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLS 429
           L CV    P++   E  +C+ + TGH   +++    P  K ++S
Sbjct: 487 LQCVSNVAPSMYK-EGGICKQTFTGHKDFILSVTVSPDGKWIIS 529


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = -1

Query: 500 ISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGR 321
           I L  H P   +SV +  D I+ S + +++L    SV    D   +  RW      P   
Sbjct: 52  IELVYH-PERTSSVIMRTDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNT 110

Query: 320 RLDALVD 300
            LDA +D
Sbjct: 111 NLDATMD 117


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 449 PDKIVLSSDIEALLGMGSSVI---LAGDLNCKHIRWNSHTTTPNG 324
           PDK+    + E + G+G+  I      D     + W+SHT TP G
Sbjct: 284 PDKV---DEGEFIPGVGAGTIGRIRLADFGLSKVVWDSHTQTPCG 325


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 398 SSVILAGDLNCKHIRWNSHTTTPN--GRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDI 225
           S ++LAG   C +I W    T+P+   +   +++ +L F     +   H   ++  R  +
Sbjct: 661 SEILLAGIWLCINILWPKQCTSPSQEDKERASILQNLGFGECLQMLQNHSSPDVRER--V 718

Query: 224 LDIALLKNVT 195
            D  +  NVT
Sbjct: 719 KDALMYINVT 728


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 507 VPNLTDGTRADRYRVRL 457
           +PNLTD  R + YR R+
Sbjct: 155 IPNLTDNERVEMYRRRI 171


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 60  LMPRGVAIHHSPRDGNGIGSATELHNDGTV 149
           L+P G AIHH+        ++ +L  DGT+
Sbjct: 816 LLPYGFAIHHAGMRREDRQTSEDLFADGTI 845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,496
Number of Sequences: 5004
Number of extensions: 40528
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)