Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0466
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    29   2.7  
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167           28   4.7  
11_06_0018 - 19298562-19299827                                         28   6.2  
03_01_0574 + 4243019-4244284                                           28   6.2  

>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = -1

Query: 500 ISLTGHAPIV-IASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 324
           I L+G   I+ ++  ++PP  +  ++ ++ALL  G   ++ G++    +R   H T    
Sbjct: 170 IELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNV-VGALRARGHVTI--- 225

Query: 323 RRLDALVDDLAFDIVAP 273
             L A+V ++ ++ ++P
Sbjct: 226 --LAAVVSNVTYECLSP 240


>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
          Length = 422

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 353 WNSHTTTPNGRRLDALVDD 297
           W SH T   GRRLDA++ D
Sbjct: 395 WTSHMTPEMGRRLDAILRD 413


>11_06_0018 - 19298562-19299827
          Length = 421

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 84  GLPHPWASAWLNLIHHRFRLVR 19
           GLPH + + W+++   +FR+VR
Sbjct: 143 GLPHDFKTRWVHMFPEQFRVVR 164


>03_01_0574 + 4243019-4244284
          Length = 421

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 84  GLPHPWASAWLNLIHHRFRLVR 19
           GLPH + + W+++   +FR+VR
Sbjct: 143 GLPHDFKTRWVHMFPEQFRVVR 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,887,347
Number of Sequences: 37544
Number of extensions: 321121
Number of successful extensions: 839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)