Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0466
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    38   0.004
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    34   0.063
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    33   0.11 
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    32   0.34 
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    31   0.59 
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    31   0.59 
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    31   0.78 
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical p...    28   4.2  
Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   4.2  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   4.2  
AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    27   7.3  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
 Frame = -1

Query: 470 IASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSH-TTTPNGRRLDA 309
           I++VY+PP     +   L +D   +    S  I++GD+N  H  W+S  +    GR L  
Sbjct: 3   ISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAE 62

Query: 308 LVDDLAFDIVAPLTPTHYPLNI--AHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVV 135
           L+ DL  D++      H   +      PDI       ++  + H    + +L SDH P+ 
Sbjct: 63  LI-DLHPDLIIQNEQVHTRADTYSISSPDI--TICTADLATKCH-WSTLYKLGSDHIPMK 118

Query: 134 MKLGRA 117
           +K+ +A
Sbjct: 119 LKINQA 124


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -1

Query: 437 VLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPT- 261
           ++S  I + L    S ++ GDLNC     ++   TP       L+ D +  ++ P T T 
Sbjct: 4   LISMMIVSFLAPDVSAVIGGDLNCTQYNGSAFVWTPAAVACSNLISDASCAVLYPTTDTL 63

Query: 260 HYPL--NIAHRP 231
            YP   N A RP
Sbjct: 64  GYPAPGNAAGRP 75


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 440 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV--APLT 267
           I L S I ALL   +S ++ GDLNC     ++   TP       ++ D +  ++  AP+ 
Sbjct: 2   IALVSFILALLAPQASAVIGGDLNCTSYNGSAFVWTPAATACSNVISDSSCAVLYPAPVP 61

Query: 266 PTHYP 252
              YP
Sbjct: 62  ADGYP 66


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 176 EVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDCHTPGHQPG*I*STIASV 27
           E V  +  DHRPV   L   P  +  +RT+   H   H    + + I+SV
Sbjct: 317 EPVKHVQHDHRPVNGNLNHRPKELVESRTITSVHAKSHNVQIVQNKISSV 366


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -1

Query: 437 VLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPT- 261
           ++S  I + L    S ++ GDLNC     ++   TP        + D +  ++ P T T 
Sbjct: 4   LISMMIVSFLAPDVSAVIGGDLNCTTFNGSAFVWTPAAVACSNFISDASCAVLYPTTDTL 63

Query: 260 --HYPLNIAHRP 231
               P N A RP
Sbjct: 64  GFPAPGNAAGRP 75


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = -1

Query: 473 VIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDL 294
           V+ S+ L     ++S    +L    +S ++ GDLNC      +   TP+       + D 
Sbjct: 54  VVLSLLLNKMIALVSLFFVSLFAPEASAVIGGDLNCTTYNGTAFVWTPSAVACSNTISDA 113

Query: 293 AFDIVAPLTPT-HYPL--NIAHRP 231
           +  I+ P T T  +P   N A RP
Sbjct: 114 SCAILYPTTDTLGFPAAGNAAGRP 137


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = -1

Query: 482 APIVIASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNS 345
           +P+ I  +Y PP     +   L + +E+ + + S  ILAGDLN   I W+S
Sbjct: 433 SPLSIFLIYRPPCCSVSENAALIAHLESYIPL-SRTILAGDLNFPQINWSS 482


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 398 SSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYP 252
           SS ++ GDLNC      S   TP        + D +  ++     T YP
Sbjct: 13  SSAVIGGDLNCTSYNGTSFVYTPAAVACSNAISDASCQVLYAAPDTLYP 61


>Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.13 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 440 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV--APLT 267
           I L S I ALL   +S ++ GDLNC      +            ++ D +  ++  AP+ 
Sbjct: 2   IALVSFILALLAPQASAVIGGDLNCTSYNGTAFVWNAAATACSNVISDSSCAVLYPAPVA 61

Query: 266 PTHYP 252
              YP
Sbjct: 62  ADGYP 66


>Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.10 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 440 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIV--APLT 267
           I L S I ALL   +S ++ GDLNC      +            ++ D +  ++  AP+ 
Sbjct: 2   IALVSFILALLAPQASAVIGGDLNCTSYNGTAFVWNAAATACSNVISDSSCAVLYPAPVA 61

Query: 266 PTHYP 252
              YP
Sbjct: 62  ADGYP 66


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 393   RAPHTEQRLDITA*NDLIRWKINGRDND 476
             R  + E   ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 393   RAPHTEQRLDITA*NDLIRWKINGRDND 476
             R  + E   ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914


>AC024090-8|AAF35422.2|  649|Caenorhabditis elegans Hypothetical
           protein C52E2.8 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 212 LLKNVTLRL--HSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDCHTPG 66
           L KNV + +  H++++VS        +V K    PD   V R V  CH  G
Sbjct: 519 LPKNVKIGVAYHNVDIVSRNKFAIEIIVTKKDTIPDKATVNRDVPTCHLFG 569


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 328 FGVVVCEFHLMCLQFRSPARMT 393
           F + VC F   C+ F++P RMT
Sbjct: 26  FEIPVCTFGAYCILFKTPERMT 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,363
Number of Sequences: 27780
Number of extensions: 239685
Number of successful extensions: 619
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)