Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0466
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li...    28   3.9  
At5g24590.2 68418.m02905 turnip crinkle virus-interacting protei...    27   9.0  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    27   9.0  

>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
           ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
           {Arabidopsis thaliana}
          Length = 1108

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -1

Query: 440 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDI-----VA 276
           IV ++ +E +LG  +  I   D   KH+         NGR+L  + D +  D        
Sbjct: 363 IVATTRVETMLGDTAIAIHPDDARYKHLHGKFAVHPFNGRKLPIICDGILVDPNFGTGCV 422

Query: 275 PLTPTHYP 252
            +TP H P
Sbjct: 423 KITPAHDP 430


>At5g24590.2 68418.m02905 turnip crinkle virus-interacting protein /
           TCV-interacting protein (TIP) contains Pfam PF02365: No
           apical meristem (NAM) domain; similar to NAC2
           (GI:6456751) {Arabidopsis thaliana}; identical to cDNA
           TIP mRNA,  GI:9408600
          Length = 451

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 444 IRWKINGRDNDRRVSRQ*D 500
           +R KING DND RV R+ D
Sbjct: 31  LRLKINGHDNDVRVIREID 49


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 69  RGVAIHHSPRDGNGIGSATELH---NDGT 146
           R V+  H PR GNG G+  E     NDGT
Sbjct: 758 RAVSPFHLPRTGNGAGTKAEASPQPNDGT 786


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,284
Number of Sequences: 28952
Number of extensions: 230853
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)