Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0465
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    31   0.13 
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    27   2.1  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    27   2.7  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   4.8  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   6.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   8.3  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 53  FTPTRLMYECDFSRTGTIIANLGGLFNISQIYKVRNTN 166
           F P ++  EC+  +   +IA   GL+N+S+ + +RNT+
Sbjct: 18  FRPDKITSECNTPQQQNVIAE--GLYNVSEPFPIRNTD 53


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 83  DFSRTGTIIANLGGLFNISQIYKVRNTNNC*VYCFRRYKNTRAKKLPSRKPYVFS 247
           DFS TG    + G      +IY VR  ++  VY  +R +   A K      Y+FS
Sbjct: 280 DFSPTGQEFVS-GSYDKTIRIYNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFS 333


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 465 RWWILCSFAFGYWRIIC 415
           R W L  FAFG++ +IC
Sbjct: 263 RVWTLLPFAFGFYNLIC 279


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 331 KPLVIIQCYEDRQPTLPLKKTDHLPFEATN 420
           +PLV   C EDRQ T   K+   LP + ++
Sbjct: 160 QPLVDHDCIEDRQKTFASKQLPTLPLQKSS 189


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 327 IETFGHHPVLRRQTTYFAAQENR 395
           +E FG+HP   RQ + FA+ ++R
Sbjct: 270 VEAFGNHPPWWRQLSNFASVQDR 292


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 394 DHLPFEATNDPPIPKR---EATEDXXXXXXXXITNGLQNGNHLAKADNILKTV 543
           +H+P E    P +PKR   E T++        +      G H  + +N LKT+
Sbjct: 12  EHIPAEDLETPKLPKREKIEGTKESNKVRIIILLGYSGYGYHGIQINNPLKTI 64


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 330 ETFGHHPVLRRQTTYFAAQENR 395
           E FG HP  +RQ + FA+ ++R
Sbjct: 256 EAFGSHPDWQRQLSKFASVQDR 277


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 330 ETFGHHPVLRRQTTYFAAQENR 395
           E FG HP  +RQ + FA+ ++R
Sbjct: 263 EAFGSHPDWQRQLSKFASVQDR 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,150
Number of Sequences: 5004
Number of extensions: 49318
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)