Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0465
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0245 - 1611135-1611557                                           32   0.40 
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    29   2.1  
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447...    28   4.9  
09_02_0548 - 10467342-10468810,10470309-10471632                       28   6.5  

>02_01_0245 - 1611135-1611557
          Length = 140

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 301 TLKMKRINKSKPLVIIQCYEDRQPTLPLKKTDHLPFEATNDPPIPKREAT 450
           T+ +K +  S+P +  +  E+ + T P  +   LP EA   PP PK+  T
Sbjct: 46  TVSLKPVKVSRPQLGDEEEEEEEVTTPRGEECRLPAEAATCPPAPKKPRT 95


>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 334  PLVIIQCYEDRQPTLPLKK--TDHLPFEATN-DPPIPKREATED 456
            PL +++ YE +  T  LKK   DHLP +  +  PP PK+   +D
Sbjct: 1081 PLSLLKAYEAKALTRLLKKKDIDHLPKKMIDLKPPKPKKSGFDD 1124


>12_01_0552 +
           4469009-4469080,4470052-4470117,4470808-4470941,
           4471073-4471179,4471695-4471802,4471879-4471949,
           4472126-4472185,4472264-4472319,4472663-4472723,
           4472809-4473076,4473174-4473355,4473444-4473736,
           4474048-4474138
          Length = 522

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 302 VAYKHHRGKRLKLS*RLIAK 243
           V YKH+RG R K++ R++AK
Sbjct: 282 VLYKHNRGHRFKIALRVLAK 301


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 317 ELTNRNLWSSSSVTKTDNLLCRSRKPITFRSRQQMILQYPNAKLQRIHHLHHR 475
           EL  +NL SS S+ +      R R+ IT   +Q  +L Y     Q + H HHR
Sbjct: 51  ELILQNLDSSLSLVRAAATCQRWRRVIT---QQSFVLDYDIPPHQIVGHYHHR 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,184
Number of Sequences: 37544
Number of extensions: 286538
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)