Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0465
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)                   29   2.1  
SB_18647| Best HMM Match : SH2 (HMM E-Value=7.3e-16)                   28   4.9  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         28   6.5  
SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_37499| Best HMM Match : 7tm_1 (HMM E-Value=4e-09)
          Length = 378

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 493 LQNGNHLAKADNILKTVLDLKTSNCRKN 576
           L  GNH+A+A N +K +L L+ +N  +N
Sbjct: 28  LTRGNHIARAINFIKHILYLQGNNAAQN 55


>SB_18647| Best HMM Match : SH2 (HMM E-Value=7.3e-16)
          Length = 720

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = -2

Query: 432 YWRIICCLERKVIGFLERQSRLSVFVTLDDDQRFRFVNSLHF*RGL*TPPRKTFEIIIKV 253
           YWRI+C + R+   F    +RL+V   L+D  + R  NS    + +  P ++ FE+    
Sbjct: 328 YWRILCRVNRQTWQF-SAGNRLAV-KALEDVNKIR-ENSTQ--QEVEKPQKRVFEV---- 378

Query: 252 NRENTYGFREGNFFA 208
            ++ T GF+  N+ A
Sbjct: 379 -QDKTPGFKSKNYLA 392


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 332  FDLLILFIFNVAYKHHRGKRLK 267
            F + ++F+F   YKH RGKR K
Sbjct: 2553 FIIALVFMFVACYKHGRGKRQK 2574


>SB_23053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 383 SRKPITFRSRQQMILQYPNAKLQRIHHLHHRCQ*QTVY 496
           +R      + Q + L YPNA+ Q IH ++   Q QT++
Sbjct: 23  ARNAKLLHNAQTIHLVYPNAQAQTIHLVYPNAQPQTIH 60



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 413 QQMILQYPNAKLQRIHHLHHRCQ*QTVYKTETI 511
           Q + L YPNA+ Q IH ++   Q QT++   TI
Sbjct: 57  QTIHLVYPNAQPQTIHLVYPNAQAQTIHLVCTI 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,751,644
Number of Sequences: 59808
Number of extensions: 350192
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)