Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0465
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical ...    29   3.3  

>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +1

Query: 322 NKSKPLVIIQCYEDRQPTLPLKKTDHLPFEATNDPPIPKREATEDXXXXXXXXITNGLQN 501
           N+S+P+V+ Q  +  +  +P+K+ D   F    D  +  +E TE         +T   +N
Sbjct: 688 NESEPVVVKQDVKITEEPVPMKRLDEKAFLDKIDQVVESQEETE-----KKKKVTT--KN 740

Query: 502 GNHLAKADNILKTV 543
             H+   D +LK +
Sbjct: 741 SEHILDTDEVLKKI 754


>AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical
           protein H10E21.2 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +2

Query: 5   SSTRALCSVDRIAYRAFTPTRLMYECDFSRTGTIIANLGGLFNISQIYKVRNTNNC*VYC 184
           S  + L ++   AY+  TPT++++  D + T  + ANL       + Y   NTN   V  
Sbjct: 279 SQRKKLMTIRAGAYQVATPTKILFP-DDNCTARVCANLAP----RRQYSCSNTNQAAVEL 333

Query: 185 FRR---YKNTRAK 214
            R+   Y+N R K
Sbjct: 334 LRQCSAYRNPRGK 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,330,914
Number of Sequences: 27780
Number of extensions: 273252
Number of successful extensions: 681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)