Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0465
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   9.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.1  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 392 PITFRSRQQMILQYPNAKLQRIHHLHHRCQ*QTVYKTETI 511
           P  F S  Q    + NAK+  I  L+H+    T+Y+ +T+
Sbjct: 65  PEFFDSLWQPDPYFLNAKVSEIAALNHKFSSVTLYRNKTV 104


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 422 ILQYPNAKLQRIHHLHHRCQ*QTVYKTETIWRK 520
           I++  +  ++R  H+   CQ Q V     +W+K
Sbjct: 713 IVEPTDVSVERNKHVALHCQAQGVPTPTIVWKK 745


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 422 ILQYPNAKLQRIHHLHHRCQ*QTVYKTETIWRK 520
           I++  +  ++R  H+   CQ Q V     +W+K
Sbjct: 709 IVEPTDVSVERNKHVALHCQAQGVPTPTIVWKK 741


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 496 QNGNHLAKADNILKTVLD 549
           +NG  L KAD++ K + D
Sbjct: 36  ENGIDLKKADDVKKGIFD 53


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 343 IIQCYEDRQPTLPLKKTD 396
           +  C+E+  P+LPL   D
Sbjct: 467 VAPCFEEPLPSLPLPGAD 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,542
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)