Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0464
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.21
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.64
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.1
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.1
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 1.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.0
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 3.4
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.9
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 7.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 7.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.21
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 77 SQNQSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 250
S + S+ S STS ST SS T+++ + S+ STA+ S +++ ++ S +S
Sbjct: 223 SSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280
Score = 28.3 bits (60), Expect = 0.84
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 77 SQNQSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 250
S + S + STS Y + SSV ++++ + S+ + + S++T+ +T S +S
Sbjct: 191 STSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.7 bits (61), Expect = 0.64
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 107 SKQSTSERYSTESS-VDPTTTAAGAKSNYSTATKSITTAVAATTESP-ASFATAEPIF 274
S +S++ Y+T S+ +P+T + S T + T ++TE+P +S T+ PI+
Sbjct: 1438 SGESSAFTYTTSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIY 1495
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 476 NTAATTNSTRTHSSCSATTDTGSI 547
++AAT+ STR SS A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 476 NTAATTNSTRTHSSCSATTDTGSI 547
++AAT+ STR SS A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 80 QNQSNAR--KRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITT 217
+ SN++ SK+ TSER +SSV P+ + S+ S K + T
Sbjct: 85 ETSSNSKLISASKEITSERKRAKSSVSPSYLTDSSPSDLSVENKVLLT 132
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.0
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Frame = +2
Query: 83 NQSNARKRSKQSTSERYSTESSVDPTTTAAGAK-----SNYSTATKSITTA----VAATT 235
N+++A ++S +STS S S + TA A+ + YST+ ++TT+ ++T
Sbjct: 251 NKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQISST 310
Query: 236 ESPASFATAEP 268
S +SF P
Sbjct: 311 ISSSSFIVESP 321
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 SNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTE-SPA 247
SNA+ S +S S SSV ++A + + S ++ S + + +A+++ SPA
Sbjct: 243 SNAKTASTDDSSSASSATSSVSSVVSSASSALSASASSASASVSSSASSDASPA 296
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 113 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 241
+ST++ +ST +PTTTA + S S T + + + S
Sbjct: 144 KSTNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTS 186
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 80 QNQSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFAT 259
QN SN S + S SS DP+ S+ S+ + +++ T +P+S +T
Sbjct: 130 QNNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSSVSSGKQHLSSLSLHTHFNPSSSST 189
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 74 LSQNQSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 241
L+ S S +S + + SSV PT+ + S++++++ S TT + A+ S
Sbjct: 275 LTTTGSTTTTGSATVSSSPFYSNSSVIPTSVPSSV-SSFTSSSSSYTTTLTASNTS 329
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 460 TKLLNQYSSNNKLYKNTFKLFSN 528
+KLL + S +LY++ +KLF N
Sbjct: 748 SKLLADHQSQVQLYQSCYKLFKN 770
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 7.9
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 89 SNARKRSKQSTSERY--STESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFAT 259
SN+ S S S Y + SSV ++T A + ++ S++T S +T+ + S A+
Sbjct: 534 SNSLSSSTSSVSTSYIPNASSSVYASSTEALSSNSLSSSTSSASTSYIPSASSSYEVAS 592
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 77 SQNQSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES--PAS 250
S + S S+ + YS+ +V +T S+ STA+ I ++ ++ T S P +
Sbjct: 899 STSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSASSNTLSTEPKT 958
Query: 251 FATAEPI 271
F+++ +
Sbjct: 959 FSSSSTL 965
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,066,775
Number of Sequences: 5004
Number of extensions: 14413
Number of successful extensions: 116
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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