Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0464
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012     34   0.093
03_01_0185 - 1485023-1485733                                           30   1.5  
01_05_0760 - 24977608-24978708                                         30   1.5  
04_04_0887 + 29095087-29096166                                         28   4.6  
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795...    28   6.1  
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596...    27   8.0  
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107...    27   8.0  

>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
          Length = 296

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +2

Query: 98  RKRSKQSTSERYSTESSVDPTT-TAAGAKSNYSTATKSITTAVAATTESPASFATAEP 268
           R+ +K+ST +  S+ S        AA A ++ S+ T + TTA  ++  +PA+ A A+P
Sbjct: 144 RRNTKRSTKKSSSSSSRQGGGAGNAAAAATSSSSTTSTSTTATTSSAAAPAAAAAADP 201


>03_01_0185 - 1485023-1485733
          Length = 236

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 116 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 265
           S   R S   ++ P TT     ++ +TAT + TT V   T +P +   A+
Sbjct: 35  SVVSRLSAAGNISPATTTPPTMTSSATATSAKTTRVTVPTPAPNTVHDAD 84


>01_05_0760 - 24977608-24978708
          Length = 366

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 80  QNQSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSIT 214
           Q+++  + RS  STS R+   SS        GA   YS+++ ++T
Sbjct: 141 QSRARRKARSSPSTSRRHCPSSSWGRARLPRGAPGQYSSSSSTVT 185


>04_04_0887 + 29095087-29096166
          Length = 359

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 479 TAATTNSTRTHSSCSATTDTGSIT 550
           T AT    RTH S SA+  TG++T
Sbjct: 44  TTATWRRARTHPSASASASTGTLT 67


>03_02_0382 -
           7958634-7959272,7959358-7959583,7959725-7959810,
           7959909-7959989,7960102-7960200,7960348-7960466,
           7960557-7960677,7960831-7960881,7961041-7961142,
           7962610-7962717,7962877-7962962,7963353-7963449
          Length = 604

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 95  ARKRSKQSTSERYSTESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFATA 262
           A +  K++  ER  T+      + AA A S   ST T +    VAA   +P + ATA
Sbjct: 492 ALELEKKTVEERRKTKEETAAVSGAADAASGVTSTVTPAAGAGVAAGAAAPGAGATA 548


>09_02_0221 +
           5962606-5963197,5963711-5963837,5963994-5964100,
           5964185-5964328,5964700-5964822,5964921-5965103,
           5965540-5965718,5965797-5965823
          Length = 493

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 86  QSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 265
           QS   + SK ++S   S+ +   P  ++   K+NY T   ++  A   ++   +S    E
Sbjct: 266 QSKEAQASKHASSSTPSSRAPSAPQRSSFEQKTNYQTPASALYGAYEGSSSQGSSSGYGE 325

Query: 266 P 268
           P
Sbjct: 326 P 326


>08_01_0136 -
           1077800-1077811,1077929-1078046,1079410-1079549,
           1079627-1080313
          Length = 318

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 479 TAATTNSTRTHSSCSATTDTGS 544
           +A TT +T T SSCS+   TG+
Sbjct: 155 SATTTTTTTTSSSCSSAASTGA 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,052,509
Number of Sequences: 37544
Number of extensions: 90442
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)