Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0464
         (573 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.        32   1.6  
BC041155-1|AAH41155.1|  311|Homo sapiens SRRM2 protein protein.        32   1.6  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    32   1.6  
AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein pro...    32   1.6  
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro...    32   1.6  
AB015644-1|BAA34957.1|  229|Homo sapiens RNA binding protein pro...    32   1.6  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     32   1.6  
BC007621-1|AAH07621.1|  354|Homo sapiens orthodenticle homeobox ...    29   8.8  
AC009501-2|AAY24357.1|  354|Homo sapiens unknown protein.              29   8.8  
AB037501-1|BAA90421.1|  243|Homo sapiens Homeobox protein OTX1 p...    29   8.8  

>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
          Length = 1022

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +2

Query: 80  QNQSNARKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESP 244
           +++   RKRS+ +T    S R    +S D  +++  ++S + S A K+ TTA+A  + SP
Sbjct: 239 KSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP 298

Query: 245 AS 250
           AS
Sbjct: 299 AS 300


>BC041155-1|AAH41155.1|  311|Homo sapiens SRRM2 protein protein.
          Length = 311

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +2

Query: 80  QNQSNARKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESP 244
           +++   RKRS+ +T    S R    +S D  +++  ++S + S A K+ TTA+A  + SP
Sbjct: 143 KSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP 202

Query: 245 AS 250
           AS
Sbjct: 203 AS 204


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
           protein.
          Length = 2752

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +2

Query: 80  QNQSNARKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESP 244
           +++   RKRS+ +T    S R    +S D  +++  ++S + S A K+ TTA+A  + SP
Sbjct: 239 KSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP 298

Query: 245 AS 250
           AS
Sbjct: 299 AS 300


>AB016088-1|BAA83714.1|  956|Homo sapiens RNA binding protein
           protein.
          Length = 956

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +2

Query: 80  QNQSNARKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESP 244
           +++   RKRS+ +T    S R    +S D  +++  ++S + S A K+ TTA+A  + SP
Sbjct: 204 KSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP 263

Query: 245 AS 250
           AS
Sbjct: 264 AS 265


>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
           protein.
          Length = 1262

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +2

Query: 80  QNQSNARKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESP 244
           +++   RKRS+ +T    S R    +S D  +++  ++S + S A K+ TTA+A  + SP
Sbjct: 29  KSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP 88

Query: 245 AS 250
           AS
Sbjct: 89  AS 90


>AB015644-1|BAA34957.1|  229|Homo sapiens RNA binding protein
           protein.
          Length = 229

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +2

Query: 80  QNQSNARKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESP 244
           +++   RKRS+ +T    S R    +S D  +++  ++S + S A K+ TTA+A  + SP
Sbjct: 43  KSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP 102

Query: 245 AS 250
           AS
Sbjct: 103 AS 104


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 31.9 bits (69), Expect = 1.6
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = +2

Query: 80  QNQSNARKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESP 244
           +++   RKRS+ +T    S R    +S D  +++  ++S + S A K+ TTA+A  + SP
Sbjct: 287 KSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP 346

Query: 245 AS 250
           AS
Sbjct: 347 AS 348


>BC007621-1|AAH07621.1|  354|Homo sapiens orthodenticle homeobox 1
           protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 107 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 256
           S  S+S   S+ S+      AAG   N   A  S++T  A++  SPAS +
Sbjct: 134 SSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPASIS 183


>AC009501-2|AAY24357.1|  354|Homo sapiens unknown protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 107 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 256
           S  S+S   S+ S+      AAG   N   A  S++T  A++  SPAS +
Sbjct: 134 SSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPASIS 183


>AB037501-1|BAA90421.1|  243|Homo sapiens Homeobox protein OTX1
           protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 107 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 256
           S  S+S   S+ S+      AAG   N   A  S++T  A++  SPAS +
Sbjct: 33  SSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPASIS 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,205,387
Number of Sequences: 237096
Number of extensions: 473683
Number of successful extensions: 1709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)