Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0464
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14740.1 68414.m01762 expressed protein                             32   0.31 
At3g06180.1 68416.m00710 expressed protein                             31   0.55 
At2g12875.1 68415.m01402 hypothetical protein                          29   2.2  
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    28   5.1  
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100...    28   5.1  
At3g59400.1 68416.m06625 expressed protein                             27   6.7  
At3g09000.1 68416.m01053 proline-rich family protein                   27   6.7  
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof...    27   8.9  
At1g77200.1 68414.m08992 AP2 domain-containing transcription fac...    27   8.9  

>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 19/40 (47%), Positives = 22/40 (55%)
 Frame = +2

Query: 74  LSQNQSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYS 193
           LS   SNA KR +  TSER +T  S D T TA     +YS
Sbjct: 158 LSLTASNAVKRPRVVTSERTTTSFSNDFTATAPSMSYSYS 197


>At3g06180.1 68416.m00710 expressed protein 
          Length = 241

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 12/44 (27%), Positives = 31/44 (70%)
 Frame = +2

Query: 119 TSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 250
           + E +ST +S+ P+++A+ + SN+S+++ S ++++     SP++
Sbjct: 8   SDEEHSTTNSMPPSSSASRSASNHSSSSSSSSSSLHLCKHSPSA 51


>At2g12875.1 68415.m01402 hypothetical protein
          Length = 325

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 80  QNQSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 250
           + +    +  K+  + + S    + P     G K     ATK I     ATTE P+S
Sbjct: 44  KEEEEKEEEKKKGMTTKESPPMIIMPVKKKTGLKRKRGVATKLIDKGTKATTEEPSS 100


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
            PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 119  TSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPI 271
            +SE   TES+ +    A       +   +S     AA  E+PAS   A P+
Sbjct: 1174 SSEAPQTESAPETAAAAESPAPETAAVAESPAPGTAAVAEAPASETAAAPV 1224


>At1g28400.1 68414.m03492 expressed protein similar to E6
           (GI:1000090) [Gossypium barbadense]
          Length = 335

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 454 YSTKLLN--QYSSNNKLYKNTFKL-FSNNRYRQHY 549
           Y TK  N  ++++NN  Y   FK  F+NN+Y ++Y
Sbjct: 142 YGTKGYNNEEFNNNNNKYDANFKEEFNNNKYDENY 176


>At3g59400.1 68416.m06625 expressed protein
          Length = 265

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 155 PTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 265
           PT+ A  +    +++T S TTAV+A + + AS  TAE
Sbjct: 40  PTSAATFSLICSASSTSSSTTAVSAVSTTNASATTAE 76


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 83  NQSNARKRSKQSTSERYSTE---SSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASF 253
           +  ++R  S+ +T  R ST    S+  P TT A    + +  +++  TA  ATT + A  
Sbjct: 149 SSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAPR 208

Query: 254 AT 259
            T
Sbjct: 209 TT 210


>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 705

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 86  QSNARKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 265
           Q+ A+K   Q+ +++   +++   T TA       +TAT   TTA A TT +P +  T E
Sbjct: 55  QAPAKKEKVQAPAKKAKVQATAKTTATAQ------TTATAMATTA-APTTTAPTTAPTTE 107


>At1g77200.1 68414.m08992 AP2 domain-containing transcription factor
           TINY, putative similar to transcription factor TINY
           (GI:1246403)  [Arabidopsis thaliana] similar to TINY
           (GP:1246403) [Arabidopsis thaliana] similar to TINY
           (GP:1246403) [Arabidopsis thaliana]
          Length = 244

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 152 DPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPI 271
           DPTT  A A++  S+++ S  T+ + +  S  + +TAE +
Sbjct: 139 DPTTVIAPAETQLSSSSYSTCTSSSLSPSSEEAASTAEEL 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,575,289
Number of Sequences: 28952
Number of extensions: 72880
Number of successful extensions: 345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)