Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0463
         (586 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    44   0.003
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    40   0.057
UniRef50_Q9B8V3 Cluster: NADH dehydrogenase subunit 5; n=7; Schi...    34   2.8  
UniRef50_A4VER8 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_Q8HEI1 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   6.6  
UniRef50_Q70US7 Cluster: NADH dehydrogenase subunit 2; n=3; Onch...    33   6.6  
UniRef50_A4XLU5 Cluster: Radical SAM domain protein; n=1; Caldic...    32   8.7  
UniRef50_Q23YG6 Cluster: Cation channel family protein; n=2; cel...    32   8.7  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 44.0 bits (99), Expect = 0.003
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = -3

Query: 524  LLRVLNGSQRLGSAPGIAEVHGQR 453
            L RVL+G QRLGSAPGIAEVHG+R
Sbjct: 963  LWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 39.5 bits (88), Expect = 0.057
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = -1

Query: 463 MGNGNHSPSGGPYACLPTWAIKKKKLLS 380
           MG+GNHSPSG PYA LPT A  K KL S
Sbjct: 1   MGDGNHSPSGRPYASLPTRA--KMKLTS 26


>UniRef50_Q9B8V3 Cluster: NADH dehydrogenase subunit 5; n=7;
           Schistosoma|Rep: NADH dehydrogenase subunit 5 -
           Schistosoma mekongi
          Length = 530

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +1

Query: 40  SRVFFFFFLMNYIGGVFCVAYQYSNFCFVTKLNLLFICFNLKILF*LSTSLFVFIVTVY 216
           S VF    + +YI  V+   Y +S+  F   L+ + ICF+L +L  +STS F+  + ++
Sbjct: 50  SYVFLMLMVCSYISVVYSYHY-FSDGKFAWLLSFIMICFSLVMLILVSTSSFLVSLVLW 107


>UniRef50_A4VER8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 175

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 115 FCFVTKLNLLFI--CFNLKILF*LSTSLFVFIVTVYF*QIKIHLNKTYKLQFIYE 273
           F F  KL+ L I  CFN+K  +    + F+    VYF Q+K+ +NK   + FI +
Sbjct: 15  FMFKQKLDFLNISNCFNIKFTYYYKINYFI----VYFQQLKVQINKQLMICFIQD 65


>UniRef50_Q8HEI1 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=2; Varroa destructor|Rep: NADH-ubiquinone
           oxidoreductase chain 5 - Varroa destructor (honeybee
           mite)
          Length = 571

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
 Frame = +1

Query: 46  VFFFFFL-MNYIGGVFCVAY-QYSNFCFVTKLNLLFICFNLKILF*LSTSLFVFIV---- 207
           +F F FL +N+I    C+ Y QY    F    +LLF+  NL IL    +SLF+FIV    
Sbjct: 24  IFSFMFLTLNFI----CLKYNQYFIIEFPINNSLLFLDLNLFILIDWISSLFLFIVYFIS 79

Query: 208 TVYF*QIKIHLNKTYKLQFI 267
           ++      +++ KT K +F+
Sbjct: 80  SMIIFYSNVYMMKTEKKKFL 99


>UniRef50_Q70US7 Cluster: NADH dehydrogenase subunit 2; n=3;
           Onchocercidae|Rep: NADH dehydrogenase subunit 2 -
           Dirofilaria immitis (Canine heartworm)
          Length = 284

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +1

Query: 46  VFFFFFLMNYIGGVFCVAYQYSNFCFVTKLNLLFICFN--LKILF*LSTSLFV---FIVT 210
           VFFFF+   Y+   F ++Y YS F     L +L + FN  L I F L   L     F V 
Sbjct: 176 VFFFFY---YVTMFFVISYVYSGFLSFFSLEMLMVFFNVPLSITFFLKVLLLFGSGFFVG 232

Query: 211 VYF 219
            Y+
Sbjct: 233 FYY 235


>UniRef50_A4XLU5 Cluster: Radical SAM domain protein; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           Radical SAM domain protein - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 536

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +2

Query: 179 YQRHYLFLL*RYTFDKLKYT-----LIKHINSNLYTRNIFQDPYCIIK 307
           Y R YL+   RY F K+  +     L   +NSNL TR   ++ Y  IK
Sbjct: 386 YNRQYLYFTLRYIFQKISPSEFFEKLSSKVNSNLNTREFIKELYIAIK 433


>UniRef50_Q23YG6 Cluster: Cation channel family protein; n=2; cellular
            organisms|Rep: Cation channel family protein -
            Tetrahymena thermophila SB210
          Length = 2014

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 348  HSK*FMVLNRFSNVLIIQYGSWNMFLVYKLEFICFIKVYFNLSKVYRYNK 199
            H+K F+ +NRF+N  I QY S++ F   K  F+  I  Y     VY Y +
Sbjct: 1133 HNKRFLYINRFAN-KIKQYSSYHRFTETKKRFLQIIDDYAFDYDVYFYKR 1181


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,428,645
Number of Sequences: 1657284
Number of extensions: 10940148
Number of successful extensions: 26118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26078
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)