Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0463
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    29   0.50 
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    27   2.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    25   8.1  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   8.1  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 146 NKRFNFVTKQKLLY*YATQNTPPI*F 69
           NKRF   TK+++ Y  A+ N PPI F
Sbjct: 44  NKRFQNYTKRQICYNVASPNEPPIDF 69


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 559 PPGLNIYRVRYDY*EYL-TVASGLALHLVLLKSMGNGN 449
           PPG  IY  R ++ EY+  + +  A+    ++S G GN
Sbjct: 70  PPGDGIYVAREEFEEYIRPIFNAAAIEFETVESKGEGN 107


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 441 GEWLPLPMDFSNTRCRAKPL 500
           GEW  +P    N +CRAK L
Sbjct: 478 GEWNTVPGHHKNPKCRAKKL 497


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -1

Query: 583 TAAPSKTRPPGLNIYRVRYDY*EYLTVASGLALHLVLLKSMGNGNHS--PSGGPY 425
           T  PS T+P    +Y    D+ EY    S    +L+   S    +HS  P   PY
Sbjct: 207 TRLPSYTKPDDDTVYHFNEDFKEYGASRSEFYPYLLAAVSDRGEHHSIPPEDTPY 261


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 376 HNLIIFFFLLPM*VDKHTAHLMASG 450
           H L++F FL    +D H  HL  SG
Sbjct: 273 HALVVFLFLPVCCLDPHFLHLSFSG 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,517
Number of Sequences: 5004
Number of extensions: 47667
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)