Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0463
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At5g37480.1 68418.m04514 expressed protein                             27   9.2  
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p...    27   9.2  
At3g01270.1 68416.m00033 pectate lyase family protein similar to...    27   9.2  

>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 492

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 463 WTSAIPGAEPSRWLPLSTLSNHNVPCKYSN 552
           W+S +PG E     P  TL  HN+P + S+
Sbjct: 409 WSSGVPGTEQVSTEPDQTLPQHNLPVENSH 438


>At5g37480.1 68418.m04514 expressed protein
          Length = 156

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 43  RVFFFFFLMNYIGGVFCVAYQ 105
           R+FF F LM  +GG+F VA +
Sbjct: 122 RIFFAFVLMFILGGLFTVALE 142


>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 534

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 487 LHLVLLKSMGNGNHSPSGGPYACLPTWAIK 398
           L + +  S  N N++  G P A  PTW +K
Sbjct: 201 LRIYVFNSFANQNNTIPGNPNADPPTWTLK 230


>At3g01270.1 68416.m00033 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 475

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 427 YACLPTWAIKKKKLLSCV 374
           + C P WA ++KKL+ CV
Sbjct: 131 WRCQPDWARRRKKLVHCV 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,316
Number of Sequences: 28952
Number of extensions: 229657
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)