Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0462
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     31   0.14 
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   5.2  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   6.9  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   9.1  

>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -2

Query: 632 DFINCIYVFEVTTGMEFAHPDFILLRKSGHKEVRLACTNI*GKITTGFSNA 480
           D++N + V+    G+E  + + ++LR +GH  V   C NI   I + F +A
Sbjct: 286 DYLNLVRVYTRPRGLEPDYSEPVILR-TGHSTVEDFCNNIHSSIKSQFKHA 335


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 517 LVQASLTSLCPDFLRSMKSGWANSMPVVT 603
           +VQ++LTS       +++SG A S+PVVT
Sbjct: 423 IVQSNLTSAAMSNNSAIRSGSAASVPVVT 451


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
 Frame = -2

Query: 620 CIYVFEVTTGMEFAH----------PDFILLRKSGH 543
           C Y  EVT  +E+ H          P+ ILL +SGH
Sbjct: 258 CFYAAEVTAALEYLHLMGFIYRDLKPENILLHQSGH 293


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 516 VSTGKSYLFVPRLPEEYEVWMGKLHACSDFKNI 614
           ++TG  ++F+P  P E   W  +L  C+   ++
Sbjct: 400 LATGADFVFIPERPAEVGKWQDEL--CNSLSSV 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,769
Number of Sequences: 5004
Number of extensions: 51069
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)