Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0462
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698...   105   4e-23
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405...    42   4e-04
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78...    29   4.1  
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630...    28   7.1  
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727...    27   9.4  
01_06_1186 + 35223272-35224723,35225536-35225610,35226245-352265...    27   9.4  

>02_02_0120 +
           6984482-6984643,6984748-6984797,6984936-6984996,
           6985574-6985669,6985754-6985903,6986208-6986339,
           6986641-6986768,6987285-6987327,6987935-6988018,
           6989049-6989090,6989264-6989334,6989621-6989674,
           6989789-6989894,6990038-6990106,6990824-6990967,
           6992038-6992113,6992295-6992353
          Length = 508

 Score =  105 bits (251), Expect = 4e-23
 Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 9/114 (7%)
 Frame = +3

Query: 321 EVPLSLFATNRRRLANKLK-----SGQ----IVVLQGGEDVNHYDTDVQYVFRQEAYFTW 473
           EVP+ L A NR RL   L+     SG+    +V+LQGGE+   Y TD   +FRQE+YF +
Sbjct: 19  EVPMELHAGNRDRLVAALRAHLSASGRPLRGLVLLQGGEEQTRYCTDHLELFRQESYFAY 78

Query: 474 VCGVREPGCYFALDVSTGKSYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVY 635
           + GVREPG Y A+D+ +G+S LF PRLP +Y VWMG++   S FK+ Y VD V+
Sbjct: 79  LFGVREPGFYGAIDIVSGQSILFSPRLPADYAVWMGEIKPLSYFKDRYKVDMVF 132


>12_02_0786 +
           23139854-23139901,23140054-23140122,23140531-23140544,
           23140603-23140675,23140875-23140979,23141817-23142080,
           23142159-23142251,23142381-23142587,23143155-23143258,
           23143436-23143502,23143576-23143683,23143943-23144033,
           23144123-23144193,23144421-23144549,23144659-23144766
          Length = 516

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 24/95 (25%), Positives = 41/95 (43%)
 Frame = +3

Query: 351 RRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGK 530
           R++L   L    + ++   E     D  V Y FRQ   + ++ G  +PG    L   TG 
Sbjct: 123 RKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEETGL 181

Query: 531 SYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVY 635
             +F+P   +E  VW G+       +N +  D+ +
Sbjct: 182 C-MFMPDTSKEDVVWQGQTAGVEAAENFFKADKAF 215


>06_01_0094 +
           779097-779155,779882-781019,781732-782115,782842-783060
          Length = 599

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = -3

Query: 532 DLPVLTSRAK*QPGSLTPQTHVK*ASCLNTYCTSVS*WFTSSPPCKTTICPLL--SLFAN 359
           DLP+++S  +    S TP T +K  +    Y  SVS    SS    ++   +L  S  A 
Sbjct: 428 DLPLISSAVRWTASSRTPSTPIKFPAISRWYSVSVSTSINSSSNLFSSAAAVLRPSTAAC 487

Query: 358 LRRF--VANKDNGTSRVPGPIDHVAAMFDD 275
           L ++  +  +D G +     +DHV     D
Sbjct: 488 LVQYSMILERDAGAAVGAAVLDHVEESIRD 517


>07_03_0755 -
           21261855-21261945,21262277-21262323,21262819-21263014,
           21263239-21263340,21263602-21263678,21264037-21264236,
           21264324-21264681,21265245-21265301,21265434-21266192,
           21266287-21266468,21266651-21266813
          Length = 743

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = +3

Query: 327 PLSLFATNRRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYF 506
           PL   A  +   +     G+I VL GG+ V  +DT   Y  R++ + T      + G   
Sbjct: 472 PLKSMAVGKSYASTVALDGKIFVLGGGDGVCWFDTVDCYDRRRDDWTTCPSFTHDKGSLA 531

Query: 507 ALDVSTGKSYLF 542
           A+  + GK Y +
Sbjct: 532 AVSFN-GKIYAY 542


>12_02_0811 -
           23370455-23370472,23372279-23372538,23372645-23372713,
           23372979-23373105,23373187-23373422,23373509-23373678,
           23373855-23373935,23374013-23374084,23374273-23374344,
           23374450-23374588,23375141-23375643,23376817-23377010,
           23377952-23378488
          Length = 825

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 277 HRTWQRRGLWALALLKCRYLCSQQTD 354
           HR W+RR L  L LL C  +  QQ D
Sbjct: 9   HRRWRRRLLPKLMLLLCAVVHGQQPD 34


>01_06_1186 +
           35223272-35224723,35225536-35225610,35226245-35226585,
           35226621-35227005,35227131-35227559
          Length = 893

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 418 FTSSPPCKTTICPLLSLFANLRRFVANKDNGTSRVPGP 305
           FT+  P  T +  L  L   L+  V  KDNG  R+  P
Sbjct: 342 FTTRQPVTTVLGKLKELAKRLKLKVKKKDNGVLRLAAP 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,842,477
Number of Sequences: 37544
Number of extensions: 309729
Number of successful extensions: 572
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)