Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0461
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    56   2e-10
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    56   2e-10
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.97 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 56.4 bits (130), Expect = 2e-10
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
 Frame = +1

Query: 190 HLVAGISGGVTSTLILHPLDLIKIRFAVNDGRTATVPRYDGLSSAFVTIVKKEGVRGLYR 369
           +L +G + G TS   ++PLD  + R A + G+      + GL +    I K +G+ GLYR
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYR 177

Query: 370 GVTPNVWGSGSAWGFYFLFYNAIKTWIQGGNARTP--LGPGLHMLAAAEAGVLSLVMTNP 543
           G   +V G       YF FY+  +  +     +TP  +  G+  +    AG++S     P
Sbjct: 178 GFGVSVQGIIIYRAAYFGFYDTARGMLPDPK-KTPFLISWGIAQVVTTVAGIVSY----P 232

Query: 544 IWVVKTRLCLQ 576
              V+ R+ +Q
Sbjct: 233 FDTVRRRMMMQ 243



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
 Frame = +1

Query: 187 EHLVAGISGGVTSTLILHPLDLIKIRFAVN--DGRTATVPRYDGLSSAFVTIVKKEGVRG 360
           + L  G++  ++ T +  P++ +K+   V     + +   RY G+   FV I K++G   
Sbjct: 13  DFLAGGVAAAISKTTVA-PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 361 LYRGVTPNVWGSGSAWGFYFLFYNAIKTWIQGG---NARTPLGPGLHMLAAAEAGVLSLV 531
            +RG   NV          F F +  K    GG   N +       ++ +   AG  SL 
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLC 131

Query: 532 MTNPIWVVKTRL 567
              P+   +TRL
Sbjct: 132 FVYPLDFARTRL 143


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 56.4 bits (130), Expect = 2e-10
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
 Frame = +1

Query: 190 HLVAGISGGVTSTLILHPLDLIKIRFAVNDGRTATVPRYDGLSSAFVTIVKKEGVRGLYR 369
           +L +G + G TS   ++PLD  + R A + G+      + GL +    I K +G+ GLYR
Sbjct: 118 NLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYR 177

Query: 370 GVTPNVWGSGSAWGFYFLFYNAIKTWIQGGNARTP--LGPGLHMLAAAEAGVLSLVMTNP 543
           G   +V G       YF FY+  +  +     +TP  +  G+  +    AG++S     P
Sbjct: 178 GFGVSVQGIIIYRAAYFGFYDTARGMLPDPK-KTPFLISWGIAQVVTTVAGIVSY----P 232

Query: 544 IWVVKTRLCLQ 576
              V+ R+ +Q
Sbjct: 233 FDTVRRRMMMQ 243



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
 Frame = +1

Query: 187 EHLVAGISGGVTSTLILHPLDLIKIRFAVN--DGRTATVPRYDGLSSAFVTIVKKEGVRG 360
           + L  G++  ++ T +  P++ +K+   V     + +   RY G+   FV I K++G   
Sbjct: 13  DFLAGGVAAAISKTTVA-PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 361 LYRGVTPNVWGSGSAWGFYFLFYNAIKTWIQGG---NARTPLGPGLHMLAAAEAGVLSLV 531
            +RG   NV          F F +  K    GG   N +       ++ +   AG  SL 
Sbjct: 72  YWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLC 131

Query: 532 MTNPIWVVKTRL 567
              P+   +TRL
Sbjct: 132 FVYPLDFARTRL 143


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 182 LMWLRSASLEDDG-FGFFIVVMTNFTESHTSFVK 84
           L W  SASLE+D  FGF  ++     +  T+ +K
Sbjct: 13  LFWQNSASLENDNEFGFSYLLNCKNYDHPTTLLK 46


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 458 PPCIHVLMAL*NRK*NPQAEPEPQTFGVTPL 366
           P C+ V+M+  +    P+A P   T GVT L
Sbjct: 254 PTCLIVIMSWVSFWIKPEAAPARVTLGVTSL 284


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 227 VDVTPPDIPATRCSYLMWLRSA 162
           V V PPDI     ++L W+ SA
Sbjct: 332 VPVEPPDILMPALTWLGWINSA 353


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 292 TVPRYDGLSSAFVTIVKKEGVRG 360
           TVPRY G+ S+   I +K G  G
Sbjct: 83  TVPRYKGVPSSLNVISEKIGNGG 105


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = +3

Query: 504 RRSGGLVSRYDEPHMGREDSP--LPP 575
           R   GLVS    P  GRE  P   PP
Sbjct: 384 RNRSGLVSGSSTPGTGREHDPAKFPP 409


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 433 AIKTWIQGGNARTPLGPG 486
           ++  W+ GGNA     PG
Sbjct: 577 SVPDWMMGGNANRNFMPG 594


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 304 NGVPWPSFHHSQQ 266
           NG+PW    HS++
Sbjct: 85  NGIPWVILGHSER 97


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = +1

Query: 427 YNAIKTWIQGGNARTPLGPGLHMLAAAEAGVLSLVMTNPIWV 552
           YN +   +   + R  +  GL +    +  + + +MT  +WV
Sbjct: 32  YNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWV 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,795
Number of Sequences: 438
Number of extensions: 4689
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)