Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0460
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.36 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.47 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.9  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   3.3  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    26   4.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   7.7  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.7  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -2

Query: 389 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 243
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 455 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 276
           TS + TSL ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 275 KSSSWVSPSEA 243
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 319 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 414
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 164  SVNILAVKLSFPFLSTLERFVTAAIAATGASKQTNDCLHVCGLRLSNVPRAEFL 3
            SVN   +     FL+++       I  +G S+ + DCL V G   + +P   FL
Sbjct: 3564 SVNSALLTSWICFLNSIGAINCVGIVVSGRSEISMDCLEVMGPLFNTIPFPLFL 3617


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -2

Query: 179 LFFTTSVNILAVKLSFPFLSTLERFVTAAIAATGASKQTNDCLHVCGLRLSNVPRAEF 6
           ++F  + N+L V +S  ++ +  R  TA +    A+     C+HV    L++V   ++
Sbjct: 298 VYFGHTDNVLGVVVSENYIISSSRDHTARVWRLDATSPAEACMHVLRGHLASVNSVQY 355


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 530 YWVFSSTQSLIDLAATVF 477
           YW ++S  +L+DL A VF
Sbjct: 451 YWTYTSVWNLLDLPAVVF 468


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -3

Query: 424 LQNSRLVFHHHERILYSPF*AQRL*LI 344
           L+    +++ H ++++SPF +QR+ L+
Sbjct: 901 LEKQWTLYYSHSKLMFSPFSSQRIILL 927


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 106 NLSNVLKNGNDNFTARMFTEVV 171
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,843
Number of Sequences: 5004
Number of extensions: 42617
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)