Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0460
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      54   6e-08
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      42   3e-04
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      35   0.040
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 31   0.86 
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   2.6  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   6.1  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   8.0  
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
 Frame = +1

Query: 202 SAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANK 381
           S  S++  LA   L + G T  ++ K   FP D   +     ++ +  +  G ++ MAN+
Sbjct: 33  SPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQILMANR 92

Query: 382 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAK-SINDWVEENTQ 528
           ++   G ++ E F   S++ F++++  +D+ KN+  A+ ++N WVE+ T+
Sbjct: 93  LFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTK 142


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
 Frame = +1

Query: 226 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD---LRSIKGV-ELKMANKVYVH 393
           L  + L S G T  ++    G+ + +   T    K      L S  G  E+++ NK++ H
Sbjct: 5   LGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGH 64

Query: 394 DGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTQ 528
           D  ++ E F   +R+ ++S++  +DF +K   A K +N WV + T+
Sbjct: 65  DEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTK 110


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 361 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTQ 528
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE T+
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTK 105


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +1

Query: 52  RQSFVCLLAPV-AAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPL 228
           R S VC  A +  +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L
Sbjct: 23  RCSPVCKCAHIDKSMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKL 82

Query: 229 AQLALASDG 255
             L L+S+G
Sbjct: 83  LTLDLSSNG 91


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 413 RILQSFPGTSSIRTSKTLISRRIQSQLS 496
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 253 HQKLKLTEREEAAPKMPRGQRFSL 182
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 253 HQKLKLTEREEAAPKMPRGQRFSL 182
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 253 HQKLKLTEREEAAPKMPRGQRFSL 182
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 253 HQKLKLTEREEAAPKMPRGQRFSL 182
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 253 HQKLKLTEREEAAPKMPRGQRFSL 182
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 396  WWKTRREFCSRFQGRLQFGRPK 461
            W + RRE+C++ Q R ++ +P+
Sbjct: 1275 WLRWRREYCTQLQSRQKWNKPQ 1296


>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 253 HQKLKLTEREEAAPKMPRGQRF 188
           H+ L + ER+ ++PK PR  +F
Sbjct: 21  HENLSINERDSSSPKRPRQHQF 42


>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 169 VKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAI 309
           ++  P  S VLS  S  PPL  +    +  T   + + I  PD++A+
Sbjct: 221 IELGPQSSGVLSLTSDPPPLEAMGKEGEAHTDSGVEEEIDIPDEEAV 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,391,498
Number of Sequences: 59808
Number of extensions: 313819
Number of successful extensions: 885
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)