Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0459
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)           51   5e-07
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    28   4.8  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  
SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)                      27   8.4  

>SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)
          Length = 175

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
 Frame = +2

Query: 5   GIRHEG*FHCQN*IFLE-----KFPDR*EVRNMLVSKLVGLRAATTSMMVSRNL------ 151
           G+RH G  H Q     E     KF     +  +  S+L     +T S+++ RN+      
Sbjct: 48  GLRHLGFVHVQTKQRFESCISLKFTTMASI--LRASRLAVASPSTCSIVLRRNIGTTYAA 105

Query: 152 -AAAQKATDPIQQLFLDKIREYKQKSAGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGID 328
            A   K  DPIQ+LF++K+  YKQKS GGK+ D++P +             +YGG    +
Sbjct: 106 MAKMDKNADPIQRLFVEKLEAYKQKSKGGKLIDSTPEMESEIEKEREQIRKRYGGQ---N 162

Query: 329 MTAFPSLKF 355
           +  FP   F
Sbjct: 163 LEEFPKFDF 171


>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 53  EKFPDR*EVRNMLVSKLVGLRAATTSMMVSRNLAAAQKATDPIQ--QLFLDKIREYKQKS 226
           ++FPDR EV++   SKL  +     + + +++  A +K T P    ++F     ++ +  
Sbjct: 446 DEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPFSGVEVFQKNKLKHVETL 505

Query: 227 AGGKVPDA 250
               +PDA
Sbjct: 506 EKNPLPDA 513


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 25   ISLSKLNILGEIP*SIGSEKYARIKTG 105
            I+ ++LN LGE+P    S+KY++I +G
Sbjct: 1226 IAFNELNELGELPIHRTSKKYSKIGSG 1252


>SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)
          Length = 862

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -1

Query: 185 VGWDR*LSELPLNFY*PSWKWSPPSNQPVLIRAYFSLPIDQGISPRIFSFDS 30
           VG  + L+  PLN      KW  P   P   R Y  + +D G SP    F S
Sbjct: 61  VGAPKNLNAYPLNSTAIQLKWQAPQGAPADERYYLYMGLD-GASPSSMPFAS 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,439,227
Number of Sequences: 59808
Number of extensions: 278504
Number of successful extensions: 415
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)