Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0458
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 111 5e-26
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 109 2e-25
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 91 7e-20
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 88 6e-19
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 61 1e-10
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 54 2e-08
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 53 2e-08
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 51 1e-07
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 49 5e-07
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 49 5e-07
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 46 3e-06
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 46 3e-06
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 43 3e-05
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 39 4e-04
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 37 0.002
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 36 0.003
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 36 0.004
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 36 0.004
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 36 0.005
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 33 0.020
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 32 0.045
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 32 0.060
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 27 1.7
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 27 2.2
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 2.2
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.9
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 26 3.9
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 25 5.2
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 25 6.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.8
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 25 6.8
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 6.8
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 25 6.8
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 9.0
SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 111 bits (268), Expect = 5e-26
Identities = 52/135 (38%), Positives = 82/135 (60%)
Frame = +2
Query: 119 LFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKVWDIGG 298
LF +EM + ++GL +GKTT + + Q S IPTVGFN+ VT N+ VWD+GG
Sbjct: 16 LFSNKEMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVGFNVETVTYKNIKFNVWDVGG 74
Query: 299 QPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 478
Q + R +W Y G ++++VD+AD ++I +R ELH ++ +++ +LVL NK+DL
Sbjct: 75 QDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDL 134
Query: 479 PQALDEHGLIERMNL 523
P AL + + + L
Sbjct: 135 PGALSPAQITDVLQL 149
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 109 bits (262), Expect = 2e-25
Identities = 49/137 (35%), Positives = 82/137 (59%)
Frame = +2
Query: 113 KSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKVWDI 292
+SLF K EM + +VGL +GKTT + + G+ IPT+GFN+ V N++ VWD+
Sbjct: 10 QSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYRNISFTVWDV 68
Query: 293 GGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKR 472
GGQ + R +W Y + I+++VD+ D ++I + EL +L + +L +LV NK+
Sbjct: 69 GGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQ 128
Query: 473 DLPQALDEHGLIERMNL 523
DLP A++ + +++ L
Sbjct: 129 DLPNAMNAAEITDKLGL 145
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 91.5 bits (217), Expect = 7e-20
Identities = 44/132 (33%), Positives = 75/132 (56%)
Frame = +2
Query: 128 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKVWDIGGQPR 307
+ E+ + L+GL +GKTT + + + +E + PT GF +R + + +WDIGGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTILKCLLNEDVNE-VSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 308 FRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDLPQA 487
R+ W+ Y AI+++VD+ D ++E RN L LL +++L +LVL NK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 488 LDEHGLIERMNL 523
L + + +N+
Sbjct: 133 LSSEEISKILNI 144
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 88.2 bits (209), Expect = 6e-19
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Frame = +2
Query: 86 LINRILDWIKSL-FWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTK 262
+IN D + L + ++ +GL +GKTT ++++ + + + M PT+ ++
Sbjct: 3 IINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAV-MQPTLHPTSEELAI 61
Query: 263 GNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTG 442
GNV +D+GG + R +W Y VN IVY+VD D +++ S+ EL +LL ++L
Sbjct: 62 GNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELAR 121
Query: 443 IPVLVLGNKRDLPQALDEHGLIERMNL 523
+P L+LGNK D P A+ E L + L
Sbjct: 122 VPFLILGNKIDAPGAISEDELKAALGL 148
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 60.9 bits (141), Expect = 1e-10
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Frame = +2
Query: 140 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--VWDIGGQPR 307
+L L+G GK+ + A ++E I T+G F +R T+K +WD GQ R
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 308 FRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 478
FR++ Y RG + I+ + D D D + L +++ + G+ L++GNK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 53.6 bits (123), Expect = 2e-08
Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Frame = +2
Query: 128 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKVWDIG 295
K +++ ++G GKT+ +N + +FS+D T+G F ++V + VT+++WD
Sbjct: 6 KHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTA 65
Query: 296 GQPRFRSMWERYCRGVNAIVYMVDAADP---DKIEASRNELHSLLEKQQLTGIPVLVLGN 466
GQ RF+S+ + RG + V + D + + +++ R+E P ++LGN
Sbjct: 66 GQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGN 125
Query: 467 KRDLPQ 484
K D+ +
Sbjct: 126 KVDVEE 131
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 53.2 bits (122), Expect = 2e-08
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +2
Query: 137 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKVWDIGGQP 304
+++ ++G GKT+ + G F E+ T+G N + T +T +WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 305 RFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRD 475
F +M C AI++M D + + S E + T +P+L+ G K D
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLN-SIKEWYRQARGFNKTAVPILI-GTKYD 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 50.8 bits (116), Expect = 1e-07
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Frame = +2
Query: 137 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--VWDIGGQP 304
++L L+G GK+ + + F+ I T+G F +R + IK +WD GQ
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 305 RFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRD 475
RFR++ Y RG I+ + D D + R S +E+ + +++GNK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT-WFSNVEQHASENVYKILIGNKCD 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 48.8 bits (111), Expect = 5e-07
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Frame = +2
Query: 137 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGN----VTIKVWDI 292
+++ L G +GK+ + Q+ + + TVG + V GN + +++WD
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 293 GGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKR 472
GQ +FRS+ Y RG V + D + D E + L + T I V++ G+K
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPST-ICVVLAGSKS 128
Query: 473 DL 478
DL
Sbjct: 129 DL 130
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 48.8 bits (111), Expect = 5e-07
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Frame = +2
Query: 137 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKVWDIGGQP 304
+++ ++G GKT +N + +FS + T+G F + V + VT+++WD GQ
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 305 RFRSMWERYCRGVN--AIVYMVDAADP-DKIEASRNELHSLLEKQQLTGIPVLVLGNKRD 475
RF+S+ + RG + IVY V+ + D +E R E Q P +++GN+ D
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEF-LYQTSQDECAFPFIIVGNQID 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 46.4 bits (105), Expect = 3e-06
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Frame = +2
Query: 122 FWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTK----GNVTIKVWD 289
F + +L +G Q GKT+ + QF T+G + T V +++WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 290 IGGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNK 469
GQ RFRS+ Y R + + + D + + + + + ++ + ++++GNK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIED-VRAERGDDVIIVLVGNK 125
Query: 470 RDL 478
DL
Sbjct: 126 TDL 128
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 46.0 bits (104), Expect = 3e-06
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Frame = +2
Query: 149 LVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--VWDIGGQPRFRS 316
L+G GK+ + +F+ + T+G F R + N IK +WD GQ R+R+
Sbjct: 15 LIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRA 74
Query: 317 MWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 478
+ Y RG + + D + L L E + I ++++GNK DL
Sbjct: 75 ITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD-SNIVIMLVGNKTDL 127
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 42.7 bits (96), Expect = 3e-05
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = +2
Query: 140 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV----TKGNVTIKVWDIGGQPR 307
+L LVG +GKTTFV +G+F + I T+G + + G + VWD GQ +
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 308 FRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDLPQ 484
+ + Y + M D + + L+ + IP+++ GNK D+ +
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV--RVCENIPIVLCGNKVDVKE 127
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 39.1 bits (87), Expect = 4e-04
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Frame = +2
Query: 140 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM---RKVTKGNVTIKVWDIGGQPRF 310
+L +VG GKT+ ++V G F + +PTV N +V +V + +WD GQ +
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 311 RSMWERYCRGVNAIVYMVDAADPDKIE-ASRNELHSLLEKQQLTGIPVLVLGNKRDL--- 478
+ + I+ PD +E S + + +P +++G K DL
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEI--NTLCPNVPFILVGMKADLRSD 127
Query: 479 PQALDE 496
P A++E
Sbjct: 128 PVAIEE 133
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Frame = +2
Query: 134 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK---VTKGNVTIKVWDIGGQP 304
E +L +VG GK+ + F ++ PT+ + RK + + V D GQ
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
Query: 305 RFRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 478
+ +M E+Y R + + + + +L + PV+++ NK DL
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDL 125
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.003
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 230 TVGFNMRKVTKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADPDK--IEASRN 403
T+G + T ++ I+++D+GGQ R W VN+I++ V D DK E +
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 404 ELHSLLEKQQL 436
E + L+E L
Sbjct: 239 ERNRLVESISL 249
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 35.9 bits (79), Expect = 0.004
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = +2
Query: 140 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM---RKVTKGNVTIKVWDIGGQPRF 310
+L +VG GKT + V + G F E +PTV N +V +V + +WD GQ +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 311 RSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL---P 481
+ + I+ PD ++ + + S + + +P+L++ K DL P
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEV-LHFCSSLPILLVACKADLRNDP 126
Query: 482 QALDE 496
+ ++E
Sbjct: 127 KIIEE 131
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 35.9 bits (79), Expect = 0.004
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Frame = +2
Query: 143 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN-VTIKVWDIGGQPRFR 313
+ ++G + GK++ F E PT+ F+ KG ++ D GQ +
Sbjct: 9 IAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEYS 68
Query: 314 SMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 478
+ ++ G++ V + E + +L +P++V+GNK DL
Sbjct: 69 ILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDL 123
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 35.5 bits (78), Expect = 0.005
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Frame = +2
Query: 140 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNM---RKVTKGNVTIKVWDIGGQPRF 310
+L +VG GKT + V + G F E +PTV N +V ++ + +WD GQ +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 311 RSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL---P 481
+ + ++ P+ ++ + + S + + +P+L++G K DL P
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV-LHFCSNLPILLVGCKVDLRNDP 126
Query: 482 QALDE 496
+ ++E
Sbjct: 127 KTIEE 131
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 33.5 bits (73), Expect = 0.020
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +2
Query: 140 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFN-MRKVTKGN----VTIKVWDIGGQP 304
+L +VG GKT + V +SG F E +PTV N + +T G + + +WD GQ
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 305 RF 310
+
Sbjct: 76 EY 77
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 32.3 bits (70), Expect = 0.045
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Frame = +2
Query: 140 ELTLVGLQYSGKTTFVNVIASGQFSED---MIPTVGFNMRKVT-KGNVTIKVWDIGGQPR 307
++ L+G SGK++ +++ S ++D + T+ V GN+ + +WD GGQ
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEA 63
Query: 308 FRSMW-----ERYCRGVNAIVYMVD 367
F + + R V ++Y+ D
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFD 88
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 31.9 bits (69), Expect = 0.060
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 140 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK---VTKGNVTIKVWDIGGQPRF 310
++ ++G +GKT+ +NV G F + PT+ N V ++ + +WD GQ +
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 496 FVESLWQIALVAEHQHGDAGELLLLQQAVK 407
+ +LW + L+ E QH + G + L Q K
Sbjct: 181 YKNALWILCLIKETQHNEMGNIKLSSQTAK 210
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 2.2
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Frame = +2
Query: 137 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMR-KVTKGN--VTIKVWDIGGQPR 307
++ +VG GKT + + +F D +PTV N V G+ T+ ++D GQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQED 63
Query: 308 FRSMWERYCRGVNAIVYMVDAADPDKIEASRNELHSLLEKQQLTGIPVLVLGNKRDL 478
+ + + + P E + + + G+P L++G + DL
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVH-HHCPGVPCLIVGTQIDL 119
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 389 EASRNELHSLLEKQQLTGIPVLVLGNKRDLPQALDEHGLI 508
E E H L G P LGN+ + Q LDE+GL+
Sbjct: 256 ENEGTEPHDNLTFMTDLGTPYYSLGNEFERKQILDEYGLL 295
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 167 SGKTTFVNVIASGQFSEDMIPTVG 238
SGK TF+N + S SE +P +G
Sbjct: 111 SGKNTFINGLQSYLISETALPELG 134
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -1
Query: 424 LQQAVKLVTRRLDLIRVGRVHHVHNSIDPSAITLPH*TESWLATNIP 284
L +AVKL + LDL+ V +V+ S++ A+ E W+ + P
Sbjct: 351 LLEAVKLDSTNLDLMMDLAVSYVNQSLNVQALVC---LEDWIVNSFP 394
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 2 NSARGRGVNFLEK*FRLNLDFNHSEMLALINRILDWIKSLFW 127
+S GR FL++ R+ DF H E +L++++S W
Sbjct: 296 DSTSGRASRFLQEGLRITGDFKHQERC-----VLEYLESQKW 332
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 113 KSLFWKEEMELTLV--GLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKV 283
++L ++E LT++ G +GKTTF N + F+ + P + K T T++V
Sbjct: 21 ENLIKRKECGLTIMLCGASGTGKTTFFNTL----FATSLQPEKSYETAKETIAKKTLEV 75
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 501 PCSSRACGRSRLLPSTSTGMPV 436
PC+ CGR+RL P + G P+
Sbjct: 621 PCT---CGRTRLYPPVACGTPI 639
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 253 FAHVETDCWNHVFTKLA*SNDVNKSCFARILQAH 152
FA D WN K A + +S + +L+AH
Sbjct: 221 FAPFLLDAWNEPLLKSAGFDQAERSALSHLLEAH 254
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 280 LDCYVSFGYFAHVETDCWNHVFTKLA 203
LD + GYF +V D W +F + +
Sbjct: 682 LDTILRTGYFRNVSIDAWYQLFVEFS 707
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = -1
Query: 364 HHVHNSIDPSAITLPH*T--ESWLATNIPYLDCYVSFGY----FAHV 242
+H N +D + + H E W+ + I ++ Y +FG+ FAH+
Sbjct: 222 YHFANVVDDHLMHITHVIRGEEWVPSTIKHIQLYEAFGWKPPKFAHL 268
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +2
Query: 266 NVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADPDKIEASRNEL 409
N+++ + G+ R +W+ + ++A Y + + KIE + EL
Sbjct: 296 NISVAPIEEQGEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQREL 343
>SPBC1685.12c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 117
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 265 KRNNQGMGYWWPTKIPFNVGALLQRGQC 348
KR++Q + Y P I V +LQR QC
Sbjct: 27 KRHSQTLTYADPRNISITVDRVLQRIQC 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,502
Number of Sequences: 5004
Number of extensions: 40171
Number of successful extensions: 160
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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