Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0455
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.006
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 1.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 1.9
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc... 27 2.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 2.7
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 26 3.4
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp... 26 3.4
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 26 3.4
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 3.4
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 3.4
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 5.9
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 5.9
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 7.8
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 7.8
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 25 7.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 7.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.006
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 450 PNPKPG*YRPAAPLSRRLSPMLQVLD--PPIEVPAGDPGSAGRPKSGSTETTSRPPRPLH 277
P PK P PL +P + V PP+ +P P PKS S ++ PP P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPV---PKSSSGAPSAPPPVPAP 1069
Query: 276 WRESRSVPSPVG 241
E S+P+P G
Sbjct: 1070 SSEIPSIPAPSG 1081
Score = 30.7 bits (66), Expect = 0.16
Identities = 24/78 (30%), Positives = 31/78 (39%)
Frame = -1
Query: 468 PAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPP 289
P+ P PKP P P P V P + VP P S P T + PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPP---VPKPSVGVPPVPPPSTAPPVP--TPSAGLPP 1228
Query: 288 RPLHWRESRSVPSPVGEA 235
P+ ++ VP+P EA
Sbjct: 1229 VPVPTAKAPPVPAPSSEA 1246
Score = 29.1 bits (62), Expect = 0.48
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Frame = -1
Query: 501 PAHRNIITELEPAQCCHPNPKPG*YRPAAPLSRRLSPMLQ--VLDPPIEVPAGDPGSAGR 328
PA I +P+ P PKP P P P+ + V PP+ VP+G P +
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP-PVPK 1144
Query: 327 PKSGSTET---TSRPPRPLHWRESRSVPSP 247
P + + PP P + VP+P
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -1
Query: 321 SGSTETTSRPPRPLHWRESRSVPSPVGEAGWLRPYDRIFQ---AQQGMVPTVAVRAQLLV 151
SGS S P + S + PV A +RP RIF+ A P V+ + V
Sbjct: 258 SGSISKNSTSPSKVKVNASTKIVRPVSAAQTVRPGSRIFRENSASNTQRPNVSATSNSTV 317
Query: 150 -CADACRVRPETK 115
A + VRP ++
Sbjct: 318 RVASSLAVRPVSR 330
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 429 YRPAAPLSRRLSP-MLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPPRPLHWRESRSVP 253
+RP+ L ++P L PP+ VP+ S+ P + +T++ P L E S
Sbjct: 431 HRPSLVLGTSVNPHSLSPSQPPVVVPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSN 490
Query: 252 SP 247
+P
Sbjct: 491 AP 492
>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
Nse5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 139 LPCAARNKKKHHRRWATMLRLPLMRVDRNFD 47
LP +K H R W + L L DRNFD
Sbjct: 309 LPKNKIRQKLHLRAWVSFLGSALRESDRNFD 339
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(2) = 2.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 335 PAGRSLAPPKPPPDHP 288
P GRS PP PP P
Sbjct: 355 PQGRSAPPPPPPRSAP 370
Score = 21.0 bits (42), Expect(2) = 2.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 314 PPKPPPDHPG 285
PP PPP PG
Sbjct: 388 PPAPPPAIPG 397
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 72 RGRRNIVAQRRWCFFLFRAAHGKRLHTPAAVPELQRSAPCPVVPGK--FGHTGAASQ 236
+G+ +RW F A+HG L Q + P V+PG+ GH G S+
Sbjct: 158 KGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRVLPGRKMAGHMGHRSR 214
>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 88
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 135 RVRPETKKNTIVAGQRCCVCPSC 67
RVRP+ +KNTI GQ C
Sbjct: 18 RVRPKREKNTIPCGQEMAALLGC 40
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 478 RARASTVLPSESKTWLVPARSTTL 407
RA + VL S+ KTW+VP TL
Sbjct: 45 RAAQNAVLRSKEKTWIVPLILLTL 68
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 331 PAEVWLHRNHLP-TTQASTLARVTIGTLTGRRGWLAAPV*PNFPGTTGHG 185
P ++++ N +P TQAS+L T + L +PV P+ P +T G
Sbjct: 653 PPKLFVQTNCIPPVTQASSLVPSKNNTASSSSLMLDSPVTPSSPYSTSQG 702
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 101 TMVFFFVSGRTRQASAHTSSCARTATV 181
T++FF + R+ S T SC R T+
Sbjct: 10 TLLFFTSAARSSSVSVETGSCVRYTTI 36
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 344 LVRPAGR--SLAPPKPPPDHPGLYIGESHDRYPHRSARLAGCA 222
+++ +GR S+APP P P P + E P+R R+A A
Sbjct: 458 VIQTSGRPKSMAPPSPSPISPSFPLHEIQSPMPNR--RMAASA 498
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +1
Query: 130 HTASVCTHQQLCPNCNGR-HHALLCLE 207
H A CT +C NCN H A C E
Sbjct: 27 HQARECTKGSICYNCNQTGHKASECTE 53
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 335 PAGRSLAPPKPPPDHPGLYIGESHDRYPHRSARLA 231
PA APP PP+ P + IG + +Y A+ A
Sbjct: 79 PATTPSAPPVQPPNDPAI-IGSNSGQYNWNQAQTA 112
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = -3
Query: 532 TVLQDRSTILPCAPEYNNRARASTVLPSESKTWLVPARSTTLQAPLPDASS 380
T STI + STV ++ K ++TT P P ASS
Sbjct: 227 TATNGGSTITSTGASTVTSTQPSTVTSTQRKNTATTTKTTTYVGPSPSASS 277
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 228 LRPYDRIFQAQQGMVPTVAVRAQLLVCADACRVRPETKKNTIVAG 94
L P + FQA+ P + + CA +C P+ +KN + G
Sbjct: 233 LSPPNSAFQAEMPYFPI----SPAISCASSCPSTPDEQKNFFIVG 273
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 363 EVPAGDPGSAGRPKSGSTETTSRPPRPLHWRE 268
E+PA P+ ST + +PP PL+ RE
Sbjct: 225 EMPAAALEQFASPEINSTSYSLKPPIPLNTRE 256
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 369 PIEVPAGD--PGSAGRPKSGSTETTSRPPRP 283
P+ +PA P P S + +T +RPP P
Sbjct: 999 PVSMPAAKSKPAPMANPVSTAQQTQNRPPAP 1029
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,983
Number of Sequences: 5004
Number of extensions: 60934
Number of successful extensions: 201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -