Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0455
(570 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 32 0.23
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 32 0.23
At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic... 32 0.31
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 32 0.31
At1g26150.1 68414.m03192 protein kinase family protein similar t... 31 0.41
At3g24550.1 68416.m03083 protein kinase family protein contains ... 31 0.54
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 1.7
At1g75960.1 68414.m08822 AMP-binding protein, putative similar t... 29 2.2
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 29 2.9
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 29 2.9
At3g04910.1 68416.m00533 protein kinase family protein contains ... 29 2.9
At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger) fa... 28 3.8
At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger) fa... 28 3.8
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 28 3.8
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 28 3.8
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 28 3.8
At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4) 28 3.8
At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4) 28 3.8
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 28 3.8
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 28 5.0
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila... 28 5.0
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 28 5.0
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 28 5.0
At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid t... 28 5.0
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 28 5.0
At3g51350.1 68416.m05622 aspartyl protease family protein contai... 28 5.0
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 28 5.0
At3g21350.1 68416.m02696 RNA polymerase transcriptional regulati... 28 5.0
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 5.0
At2g10440.1 68415.m01097 hypothetical protein 28 5.0
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 28 5.0
At5g46690.1 68418.m05753 basic helix-loop-helix (bHLH) family pr... 27 8.8
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 27 8.8
At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger) fa... 27 8.8
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 27 8.8
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 8.8
At3g13229.1 68416.m01664 hypothetical protein 27 8.8
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 27 8.8
At1g61080.1 68414.m06877 proline-rich family protein 27 8.8
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 32.3 bits (70), Expect = 0.23
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = -1
Query: 468 PAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPP 289
P P P PA P P + PP +VPA P +P S S +S PP
Sbjct: 87 PPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPA--PAPTTKPDSPSPSPSSSPP 144
Query: 288 RP 283
P
Sbjct: 145 LP 146
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 32.3 bits (70), Expect = 0.23
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = -1
Query: 468 PAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPP 289
P P P PA P P + PP +VPA P +P S S +S PP
Sbjct: 87 PPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPA--PAPTTKPDSPSPSPSSSPP 144
Query: 288 RP 283
P
Sbjct: 145 LP 146
>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
to mRNA cap binding protein [Arabidopsis thaliana]
GI:15192738; contains Pfam profile PF02854: MIF4G
domain; identical to cDNA nuclear cap-binding protein
CBP80 GI:8515770
Length = 848
Score = 31.9 bits (69), Expect = 0.31
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -2
Query: 449 RIQNLASTGPQHHSPGASPRCFKC*ILPLKSRLATLVRPAGRSLAPPKPPPDHPGLYIG- 273
RIQ+LAS G + S F+ ++ K +RP + + P PP DH Y G
Sbjct: 223 RIQSLASNGWKLESVPRPHLSFEAQLVAGKFHE---LRPI-KCMEQPSPPSDHSRAYSGK 278
Query: 272 ESHD---RYPHRSARL 234
+ HD RYP R RL
Sbjct: 279 QKHDALTRYPQRIRRL 294
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 31.9 bits (69), Expect = 0.31
Identities = 23/78 (29%), Positives = 30/78 (38%)
Frame = -1
Query: 480 TELEPAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETT 301
T P+Q P P P + PL+ P+ + PP P P + P
Sbjct: 539 TSFSPSQPPPPPPLPS-FSNRDPLTTLHQPINKTPPPPPPPPPPLPSRSIPPPLAQPPPP 597
Query: 300 SRPPRPLHWRESRSVPSP 247
PP P SRS+PSP
Sbjct: 598 RPPPPPPPPPSSRSIPSP 615
Score = 27.1 bits (57), Expect = 8.8
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Frame = -1
Query: 450 PNPKPG*YRPAAPLSRRL-SPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPPRPLHW 274
P P+P P P SR + SP PP P GS G + PP P
Sbjct: 595 PPPRPPPPPPPPPSSRSIPSPSAPPPPPP---PPPSFGSTGNKRQAQPPPPPPPPPPTRI 651
Query: 273 RESRSVPSP 247
++ P P
Sbjct: 652 PAAKCAPPP 660
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 31.5 bits (68), Expect = 0.41
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Frame = -1
Query: 474 LEPAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIE----VPAGDPGSAGRPKSGSTE 307
L P + P+ P + P+ P S P + PP P D P G +
Sbjct: 167 LPPPKLVPPSHSPPRHLPSPPASEIPPPPRHLPSPPASERPSTPPSDSEHPSPPPPGHPK 226
Query: 306 TTSRPPRPLHWRESRSVPSP 247
+PP P R + S PSP
Sbjct: 227 RREQPPPPGSKRPTPSPPSP 246
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = -1
Query: 468 PAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDP--PIEVPAGDPGSAGRPKSGSTETTSR 295
P + P P P P P++ P P P +PA DP S P +
Sbjct: 119 PPESSPPPPPPTEAPPTTPITSPSPPTNPPPPPESPPSLPAPDPPSNPLPPPKLVPPSHS 178
Query: 294 PPRPLHWRESRSVPSP 247
PPR L + +P P
Sbjct: 179 PPRHLPSPPASEIPPP 194
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 31.1 bits (67), Expect = 0.54
Identities = 27/88 (30%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Frame = -1
Query: 501 PAHRNIITELEPAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRP- 325
P + T PA P P +P + SP PP P PGS P
Sbjct: 18 PPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPL 77
Query: 324 --KSGSTETTSRPPRPLHWRESRSVPSP 247
S S T PP P RS PSP
Sbjct: 78 PQPSPSAPITPSPPSPTTPSNPRSPPSP 105
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = -1
Query: 468 PAQCCHPNPKPG*YRPAAP-LSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRP 292
PA P P P AP ++ +SP PP PA P + P S TS P
Sbjct: 67 PASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTSPP 126
Query: 291 PRPLHWRESRSVPSP 247
P P + + P P
Sbjct: 127 PTPASPPPAPASPPP 141
>At1g75960.1 68414.m08822 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam profile: PF00501 AMP-binding enzyme;
identical to cDNA adenosine monophosphate binding
protein 8 AMPBP8 (AMPBP8) GI:20799724
Length = 544
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 170 TATVGTMPCCAWKIRSYGRSQPASPTGEGTDRDSRQCRGLGGREVVSVEPDFGRPAE 340
T T G + CAWK ++ R PAS + R R +G E+ V+P+ GR E
Sbjct: 331 TETAGVIVSCAWK-PNWNR-LPASDQAQLKSRQG--VRTVGFSEIDVVDPESGRSVE 383
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -1
Query: 468 PAQCCHPNPKPG*YRPAAPLSRR----LSPMLQV-LDPPIEVPAGDPGSAGRPKSG 316
P Q P P PG YR AP+S R +P LQ+ L PP + DP ++G
Sbjct: 132 PPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAG 187
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 450 PNPKPG*YRPAAPLSR--RLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPP 289
P+ +P Y+P P + SP+ PP++ P P + P S T+ PP
Sbjct: 117 PSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQSPPVQPPTYKPPTSPVKPPTTTPP 172
>At3g04910.1 68416.m00533 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 57 RSTRMRGRR-NIVAQRRWCFFLFRAAHGKRLHTPAAVPELQRSAPC 191
R R+R +R NI A + WC + R H H P P + R C
Sbjct: 113 RQYRLRHKRVNIRAMKHWCRQILRGLHYLHSHDP---PVIHRDLKC 155
>At5g37250.1 68418.m04475 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA3a [gi:3790573]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 192
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 103 DGVFFCFGPHTASVCTHQQLCPNCNGRHHALLCLENSVIRAQ 228
+GV C G A + T +L P+C HH L+ + +
Sbjct: 29 NGVVMCLGTFAAPLMTKIELKPSCLSSHHIYQDLDEFITHTE 70
>At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA3b, Arabidopsis thaliana, PIR:T41745 [gi:3790575];
contains Pfam domain zinc finger, C3HC4 type (RING
finger) PF00097
Length = 208
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 103 DGVFFCFGPHTASVCTHQQLCPNCNGRHHALLCLENSVIRAQ 228
+GV C G A + T +L P+C HH L+ + +
Sbjct: 45 NGVVICLGTFAAPLMTKIELKPSCLSSHHIYQDLDKFITHTE 86
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/100 (22%), Positives = 37/100 (37%)
Frame = -1
Query: 477 ELEPAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTS 298
++ P P P+P ++ P P Q+ + P VP P S + ++
Sbjct: 162 QIAPQPQVQPQPQPQQHQYYMP-----PPPTQLQNTPAPVPVSTPPSQLQAPPAQSQFMP 216
Query: 297 RPPRPLHWRESRSVPSPVGEAGWLRPYDRIFQAQQGMVPT 178
PP P H +++ P + W P + G PT
Sbjct: 217 PPPAPSHPSSAQTQSFPQYQQNW-PPQPQARPQSSGGYPT 255
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/100 (22%), Positives = 37/100 (37%)
Frame = -1
Query: 477 ELEPAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTS 298
++ P P P+P ++ P P Q+ + P VP P S + ++
Sbjct: 220 QIAPQPQVQPQPQPQQHQYYMP-----PPPTQLQNTPAPVPVSTPPSQLQAPPAQSQFMP 274
Query: 297 RPPRPLHWRESRSVPSPVGEAGWLRPYDRIFQAQQGMVPT 178
PP P H +++ P + W P + G PT
Sbjct: 275 PPPAPSHPSSAQTQSFPQYQQNW-PPQPQARPQSSGGYPT 313
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -1
Query: 417 APLSRRLSPMLQVLDPPIEVPAGD---PGSAGRPKSGSTETTSRPPRPLHWRESRSVPSP 247
+PL+ SP + PP P D P S+ P++ S ++ + P+P +S S P P
Sbjct: 91 SPLAPSSSPEVDSPQPPSSSPEADSPLPPSSS-PEANSPQSPASSPKPESLADSPSPPPP 149
>At2g23760.2 68415.m02838 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 205 PGTTGHGADRCSSGTAAGVCRRLPCAARNKKKHHRRWATMLRLPLMRVDRNFD 47
P TTG G SS +A P + ++ +H RR +L + L VDR ++
Sbjct: 274 PNTTGGGGGGGSSSSAGTANDSPPLSPADRIEHQRRKVKLLSM-LEEVDRRYN 325
>At2g23760.1 68415.m02837 BEL1-like homeobox 4 protein (BLH4)
Length = 627
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 205 PGTTGHGADRCSSGTAAGVCRRLPCAARNKKKHHRRWATMLRLPLMRVDRNFD 47
P TTG G SS +A P + ++ +H RR +L + L VDR ++
Sbjct: 274 PNTTGGGGGGGSSSSAGTANDSPPLSPADRIEHQRRKVKLLSM-LEEVDRRYN 325
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 28.3 bits (60), Expect = 3.8
Identities = 24/83 (28%), Positives = 30/83 (36%)
Frame = -1
Query: 423 PAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPPRPLHWRESRSVPSPV 244
P AP +P + P +VPA P K T+ P P E S P+P
Sbjct: 84 PPAPSPEADTPSAPEIAPSADVPA--PALTKHKKKTKKHKTAPAPGPAS--ELLSPPAPP 139
Query: 243 GEAGWLRPYDRIFQAQQGMVPTV 175
GEA P D A V +
Sbjct: 140 GEAPGPGPSDAFSPAADDQVNNI 162
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Frame = -2
Query: 335 PAGRSLAPPKPPP-----DHPGLYIGESHDRYPH 249
P G PP PPP HPG+++G R P+
Sbjct: 349 PPGMLRFPPPPPPLDMHPPHPGMFVGHLIPRPPY 382
>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 974
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 184 ADRCSSGTAAGVCRRLPCAAR--NKKKHHRRWATMLRLPLMRVDRNFDTMIRMPAFMQPR 11
A R S G ++ V RL A N++ + + + LP+ + +NF T P F P+
Sbjct: 142 APRTSQGPSSSVKERLVQAIEGLNEEVQDKDFLIQIWLPIQQEGKNFLTTSEQPHFFNPK 201
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -1
Query: 360 VPAGDPGSAGRPKSGSTETTSRPPRPLHWRESRSVPSPVGEAGW--LRPYDRIF 205
VP PG G + +T ++PP P PSP GW L P+D +
Sbjct: 243 VPGPGPGYYGSSSASTTAAATKPPPP--------PPSPPRSNGWDFLNPFDTYY 288
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 234 QPRRPVRVPIVTLANVEAWVVGRWFRWSQTSAGRPNQGRQPGLQWEDLALEASGRG 401
Q RRP I++ A +EA + +F S+ +G PG + E L GRG
Sbjct: 199 QRRRPELRLIISSATIEAKTMSNFFNSSKKR--HAPEGSTPGPKLEPAILSVEGRG 252
>At4g14805.1 68417.m02276 protease inhibitor/seed storage/lipid
transfer protein (LTP)-related weak hit to Pfam PF00234:
Protease inhibitor/seed storage/LTP family
Length = 219
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 446 IQNLASTGP--QHHSPGASPRCFKC*ILPLKSRLATLVRPAGRSLAPPKPPPDHPGL 282
+Q++ T P ++ ASP+ + P S + L P +LAPP PPP P L
Sbjct: 134 LQSIQFTNPFVSGNNVSASPQSVD--LAPEVSPSSDLFSPETATLAPPPPPPPLPVL 188
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 79 DATSLPS--DDGVFFCFGPHTASVCTHQQLCPN 171
D TS+ D+G+ C P T V THQ+L PN
Sbjct: 264 DRTSIKKWLDNGLAVC--PRTRQVLTHQELIPN 294
>At3g51350.1 68416.m05622 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 528
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -1
Query: 372 PPIEVPAGDPGSAGRPKSGSTETTSRPPRPLHWRESRSVPSPVGEA 235
PP EV A P + P T S P P++ R S P G A
Sbjct: 464 PPPEVEAPAPSVSAPPPRSLPPTVSATPPPINPRNSTGNPGTGGAA 509
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 27.9 bits (59), Expect = 5.0
Identities = 25/82 (30%), Positives = 30/82 (36%)
Frame = -1
Query: 492 RNIITELEPAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGS 313
R+++ P P P P P S SP V PP P P P S
Sbjct: 398 RSVVKPSPPIVALPPPPPPSPPLPPPVYSPPPSP--PVFSPPPSPPVYSP-----PPPPS 450
Query: 312 TETTSRPPRPLHWRESRSVPSP 247
+S PP P+H S PSP
Sbjct: 451 IHYSSPPPPPVH-HSSPPPPSP 471
>At3g21350.1 68416.m02696 RNA polymerase transcriptional regulation
mediator-related contains weak similarity to RNA
polymerase transcriptional regulation mediator, subunit
6 homolog (Activator-recruited cofactor 33 kDa
component) (ARC33) (NY-REN-28 antigen)
(Swiss-Prot:O75586) [Homo sapiens]
Length = 257
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 356 RLATLVRPAGRSLAPPKPPPDHPGLYIGE 270
R+ ++ R LAPP PPP P Y+ +
Sbjct: 194 RVDVILTSLYRKLAPPPPPPPFPEGYVSQ 222
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/75 (25%), Positives = 24/75 (32%)
Frame = -1
Query: 501 PAHRNIITELEPAQCCHPNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPK 322
P H P H +P P Y P P+ P + PP+ P S P
Sbjct: 652 PVHSPPPPVFSPPPPMH-SPPPPVYSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPV 710
Query: 321 SGSTETTSRPPRPLH 277
PP P+H
Sbjct: 711 HSPPPPVHSPPPPVH 725
>At2g10440.1 68415.m01097 hypothetical protein
Length = 935
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 476 SSSQHSVAIRIQNLASTGPQHHSPGASPRCFKC*ILPLK-SRLATLVRPAGRSLAPPKPP 300
SSSQ V + N++S+ Q+HS SP+ ILP ++ T + +G + P P
Sbjct: 551 SSSQRQVPKQESNVSSSQIQNHS---SPQLVDQHILPATINKTGTPLNSSGSAFVAPAPS 607
Query: 299 P 297
P
Sbjct: 608 P 608
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 414 PLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPPRP 283
P + ++SP ++ L PPI V + P S + S PP P
Sbjct: 385 PPTFKMSPEVRTLPPPIYVYSSPPPPPSSKMSPTVRAYSPPPPP 428
>At5g46690.1 68418.m05753 basic helix-loop-helix (bHLH) family
protein contains similarity to bHLH DNA-binding protein
Length = 327
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 192 PVVPGKFGHTGAASQPRRPVRVPIV-TLANVEAWVVGRWFRWSQTSAGRPNQ 344
P + G T + P + V ++ T AN+ R FRWS + +P Q
Sbjct: 190 PSQENRNGSTSSVKTPMEDLEVTLIETHANIRILSRRRGFRWSTLATTKPPQ 241
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 450 PNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAG 349
P P RP +P SRR SP V P+ V G
Sbjct: 774 PAVTPSSSRPVSPFSRRSSPPRSVTPIPLNVGLG 807
>At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger)
family protein ow similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA1a [gi:3790554]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 208
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 103 DGVFFCFGPHTASVCTHQQLCPNCNGRHH 189
+GV C G A + T +L P+C HH
Sbjct: 45 NGVVMCLGTFAAPLMTKIELKPSCLTSHH 73
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 412 WCCGPVLARFWIRMATLCWLELCY 483
+CCG + RFW R CW + +
Sbjct: 28 FCCG-LCGRFWFRCWFCCWFQFWF 50
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.1 bits (57), Expect = 8.8
Identities = 20/61 (32%), Positives = 23/61 (37%)
Frame = -1
Query: 429 YRPAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPPRPLHWRESRSVPS 250
Y AP S L + PP P P + P S S E PP P H + S P
Sbjct: 47 YNSPAP-SPEPEDYLPLPPPPQTPPPPPPPQSLPPPSPSPEPEHYPPPPYHHYITPSPPP 105
Query: 249 P 247
P
Sbjct: 106 P 106
>At3g13229.1 68416.m01664 hypothetical protein
Length = 289
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 479 QSSSQHSVAIRIQNLASTGPQHHSP 405
+++S HS+ I+I+N+ HH P
Sbjct: 29 KTTSSHSLTIKIENVKDEQQNHHQP 53
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/70 (31%), Positives = 27/70 (38%)
Frame = -1
Query: 423 PAAPLSRRLSPMLQVLDPPIEVPAGDPGSAGRPKSGSTETTSRPPRPLHWRESRSVPSPV 244
P AP +P + P +VPA P K T+ P P E S P+P
Sbjct: 84 PPAPSPEADTPSAPEIAPSADVPA--PALTKHKKKTKKHKTAPAPGPAS--ELLSPPAPP 139
Query: 243 GEAGWLRPYD 214
GEA P D
Sbjct: 140 GEAPGPGPSD 149
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.1 bits (57), Expect = 8.8
Identities = 22/76 (28%), Positives = 25/76 (32%), Gaps = 3/76 (3%)
Frame = -1
Query: 450 PNPKPG*YRPAAPLSRRLSPMLQVLDPPIEVPAGD---PGSAGRPKSGSTETTSRPPRPL 280
P P P AAP P V PP P G P P PP P+
Sbjct: 511 PPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPM 570
Query: 279 HWRESRSVPSPVGEAG 232
R P P+G +G
Sbjct: 571 QNRAPSPPPMPMGNSG 586
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,567
Number of Sequences: 28952
Number of extensions: 369802
Number of successful extensions: 1670
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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