Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0453
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    28   1.2  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   2.0  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   6.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.2  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   8.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   8.2  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   8.2  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 203 HLSQLHTPTEWPATMPTPRADMSHDWARKTGIPVRSAC 90
           HL+ LH   EW  T      D S++WAR+  +  +S C
Sbjct: 897 HLTLLHIWNEWVDT------DFSYNWARENFLQYKSLC 928


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 133 WDMSALGV-GIVAGHSVGVWSC 195
           WD S   V G++ GH  GVW+C
Sbjct: 492 WDSSTGEVVGVLRGHRRGVWAC 513


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = -3

Query: 188 HTPTE--WPATMPTPRADMS---HDWARKTGIPVRS 96
           +T TE  W A       D+S   H+W +KTG PV S
Sbjct: 436 NTVTEDLWAALSAESGQDISSTMHNWTKKTGYPVLS 471


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 288 GRPALPRMGDHEEVDHNDRGKV*APIVDTRSFV 386
           G  +LP  G+  ++  +D  K  AP++DT S V
Sbjct: 543 GTASLPLKGNLYQISRSDDIKSGAPVLDTSSLV 575


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 378 SFVPHRELYDASRLVDFKRST 440
           S +  ++LYDAS++   KRST
Sbjct: 29  SSITAKQLYDASKITSSKRST 49


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 443  VDK*N*LVKFLYVKS*AISEFSAILQCDNCY 535
            +D  N  +KFLY +S    E+  +L+C+  Y
Sbjct: 1266 MDNWNRKMKFLYERSMMYKEYQRVLECEYEY 1296


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 128 WARKTGIPVRSACSCTPPRSFEDIFPSTVELRQG 27
           W R  G+P  S  +       +DIFP T E++ G
Sbjct: 284 WMRTAGLPTFSKLAMRNDN--DDIFPGTYEIKIG 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,059
Number of Sequences: 5004
Number of extensions: 38829
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)