Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0453
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 46 2e-05
09_01_0134 - 2008793-2009315,2009361-2009423,2009804-2010012,201... 29 2.1
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 2.1
01_06_0723 + 31501900-31502808,31502846-31503295 29 2.1
07_03_1099 + 23945867-23945872,23945951-23946547,23948928-23949341 28 4.8
06_01_1200 + 10323013-10324428 28 4.8
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 28 4.8
08_01_1010 - 10215625-10216335,10216372-10216473 27 8.4
07_03_1447 + 26587436-26587497,26588479-26589130,26589247-265893... 27 8.4
03_01_0086 - 699617-699766,699851-699908,699998-700068,700210-70... 27 8.4
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 46.4 bits (105), Expect = 2e-05
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 46 VDGKMSSNDRGGVQLQADLTGIPVLRAQSWDMSALGVGIVAGHSVGVWSCDK--WKHHAT 219
VDG + N+ +Q+QADL G PV+R + +ALG AG +VGVWS ++ H
Sbjct: 435 VDGGATVNNLL-MQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVWSKEQIFAGLHKE 493
Query: 220 HADTFLPXXXXXXXXXXXXKWKMAVQRSLGWA 315
+ F P W AV RS A
Sbjct: 494 NTRVFRPKLDEAHRRKRADSWYKAVSRSFDLA 525
>09_01_0134 -
2008793-2009315,2009361-2009423,2009804-2010012,
2010313-2010342,2010430-2010491,2010588-2010771
Length = 356
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 307 GWATTKKSITMTEERYK-LLSSIPAALYLIGSFT 405
GW TK+++T T ER+K L + P + SFT
Sbjct: 62 GWDNTKETVTATVERWKQLKADTPGCTKFMKSFT 95
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 173 WPATMPTPRADMSHDWARKTGIPVRSACSCTPPRSFEDIF 54
+P + +++ WA + G+P R A S PR E+IF
Sbjct: 380 FPVNHKVKKQAVTYWWAAQFGLPHRRAPSAAEPRGSEEIF 419
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 64 SNDRGGVQLQADLTGIPVLRAQSWDMSALGVGIVAGHSVGVW 189
S+D G ++A T P L +WD+ LG GIV H+V W
Sbjct: 257 SSDTGSWSMEAKKTPGPKLT--NWDLGKLGHGIVL-HAVAYW 295
>07_03_1099 + 23945867-23945872,23945951-23946547,23948928-23949341
Length = 338
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 187 WSCDKWKHHATH 222
WSCD HHATH
Sbjct: 121 WSCDHCNHHATH 132
>06_01_1200 + 10323013-10324428
Length = 471
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 91 QADLTGIPVLRAQSWDMSALGVGIVAGHSVGVWSCDKW 204
+A +G+PVL + + G+VA +GVW+ D W
Sbjct: 368 EAAASGVPVLALPRFGDQRVNSGVVARAGLGVWA-DTW 404
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 97 PPVAALPHDRSRTSSRQPWSFDRGIPPSCRIP 2
PP +P S TSS P+S +PPS R P
Sbjct: 86 PPPVPVPPAYSVTSSVPPYSMTSSLPPSPRPP 117
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -3
Query: 185 TPTEWPATMPTPRADMSHDWARKTGIPVRSACSCTPPRSFEDIFPSTVELRQGHPALVPN 6
+P P+T TPR S D+ T P R A S D PST R P P+
Sbjct: 84 SPDYTPSTPTTPRRAASPDYTPSTPTPPRRAAS-------PDYTPSTPPPRAASPDYTPS 136
Query: 5 S 3
+
Sbjct: 137 T 137
>07_03_1447 +
26587436-26587497,26588479-26589130,26589247-26589335,
26589794-26589858,26589967-26590022,26590107-26590227,
26590316-26590390,26590689-26590742,26590830-26590924,
26591004-26591178,26591293-26591537
Length = 562
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 28 PCRSSTVDGKMSSNDRGGVQLQADLTGIPVLRAQSWDMSALGVGIVAGHSVGVWSCDK 201
P + G SSN+R + A + G PV Q D ++LG + A H W C++
Sbjct: 447 PPKRIIATGGASSNERI-LHSIAQIFGCPVFTVQRPDSASLGAALRAAHG---WLCNE 500
>03_01_0086 -
699617-699766,699851-699908,699998-700068,700210-700286,
700384-700466,700545-700604,700848-700983,701056-701126,
701248-701339,701454-701551,701891-702043,702146-702311,
702457-702885,703076-703157,703245-703504
Length = 661
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 64 SNDRGGVQLQADLTGIPV-LRAQSWDMSALGVGIVAGHSVGVWSCDKW 204
S+D G+ + L G PV ++ + W+ + +VAG V V+S D W
Sbjct: 540 SSDNEGLVERVVLLGAPVSVKGERWEAARK---MVAGRFVNVYSTDDW 584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,750
Number of Sequences: 37544
Number of extensions: 289847
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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