Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0453
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    44   1e-04
U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical pr...    42   2e-04
U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    42   2e-04
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    31   0.61 
Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    30   1.4  
L23651-13|AAA27957.3|  251|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF067947-8|AAC19225.1|  343|Caenorhabditis elegans Kinetochore n...    27   9.9  
AF038605-6|AAB92018.2|  247|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 42/90 (46%)
 Frame = +1

Query: 46  VDGKMSSNDRGGVQLQADLTGIPVLRAQSWDMSALGVGIVAGHSVGVWSCDKWKHHATHA 225
           VDG M +N     ++QAD+ G  ++  +  ++S  G  +  G      S D++   ++  
Sbjct: 413 VDGGMIANKLFN-EIQADIMGRDIVTPKITEISGWGAAVAGGIGAQQISLDEFLQQSSED 471

Query: 226 DTFLPXXXXXXXXXXXXKWKMAVQRSLGWA 315
           + + P            +WK AV+RS GWA
Sbjct: 472 NRYTPQKDDNWRSAELARWKEAVKRSCGWA 501


>U88181-4|AAU05583.1|  299|Caenorhabditis elegans Hypothetical
           protein C55B6.1b protein.
          Length = 299

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 64  SNDRGGVQLQADLTGIPVLRAQSWD-MSALGVGIVAGHSVGVWSCDKWKHHATHADTFLP 240
           SN+    Q  ADL G  V R    D ++A GV ++ G S G+W+ +K +   T  D F P
Sbjct: 213 SNNNFICQCIADLLGRKVERMTDSDHVAARGVALLTGFSSGIWTKEKLRELVTVEDIFTP 272

Query: 241 XXXXXXXXXXXXK-WKMAVQRSLGW 312
                       + WK AV R LG+
Sbjct: 273 NYESRKGLLKTFQTWKKAVDRCLGF 297


>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 64  SNDRGGVQLQADLTGIPVLRAQSWD-MSALGVGIVAGHSVGVWSCDKWKHHATHADTFLP 240
           SN+    Q  ADL G  V R    D ++A GV ++ G S G+W+ +K +   T  D F P
Sbjct: 437 SNNNFICQCIADLLGRKVERMTDSDHVAARGVALLTGFSSGIWTKEKLRELVTVEDIFTP 496

Query: 241 XXXXXXXXXXXXK-WKMAVQRSLGW 312
                       + WK AV R LG+
Sbjct: 497 NYESRKGLLKTFQTWKKAVDRCLGF 521


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 331 ITMTEERYKLLSSIPAALYLIGSFTMLVASSILN 432
           + +T   + +LSS PAA + + SF ++ ASS LN
Sbjct: 261 LVLTMTIFYILSSAPAAFFYLSSFILVSASSYLN 294


>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +1

Query: 304 LGWATTKKSITMTEERYKLLSSIPAALYLIGSFTMLVASSILNE 435
           L  + +++ + MTEE+Y L+ ++    + IGSF  +  +SI +E
Sbjct: 43  LNTSLSRRHVIMTEEKYDLIWNVFLNCWFIGSFFGVWINSIFSE 86


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +1

Query: 304 LGWATTKKSITMTEERYKLLSSIPAALYLIGSFTMLVASSILNE 435
           L  + +++ + MTEE+Y L+ ++    + IGSF  +  +SI +E
Sbjct: 43  LNTSLSRRHVIMTEEKYDLIWNVFLNCWFIGSFFGVWINSIFSE 86


>L23651-13|AAA27957.3|  251|Caenorhabditis elegans Hypothetical
           protein C29E4.8 protein.
          Length = 251

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 82  VQLQADLTGIPVLRAQSWDMSALGVGIVAGHSVGVWSCDKWKHHATH 222
           V ++ DLTG P++R    +   L   +V  H + V   D +K H  H
Sbjct: 172 VPMKDDLTGEPLIRRSDDNEETLRKRLVQYHQMTVPLVDYYKKHGVH 218


>Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 959

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 345 LCHCDRLLRGRPSEGALDGHLP 280
           L HC+R L  R  EG +DG+ P
Sbjct: 617 LGHCERALNERVKEGDIDGNEP 638


>Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical
           protein F58D12.3 protein.
          Length = 959

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 345 LCHCDRLLRGRPSEGALDGHLP 280
           L HC+R L  R  EG +DG+ P
Sbjct: 617 LGHCERALNERVKEGDIDGNEP 638


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 8   SARGRDA--PVEAPR-LTGRCPRTIVGECSYRRTSPVYRFCAPSRGTCP 145
           +AR R A   V APR LT R P       + R  +P  R   P R T P
Sbjct: 309 AARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAP 357


>AF067947-8|AAC19225.1|  343|Caenorhabditis elegans Kinetochore null
           protein 3 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 121 AKPVYR*GPPVAALPHDRSRTSSR 50
           A+ V R GPPV AL HD S  + R
Sbjct: 33  AREVPRAGPPVFALEHDVSEVTDR 56


>AF038605-6|AAB92018.2|  247|Caenorhabditis elegans Hypothetical
           protein C02B10.3 protein.
          Length = 247

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 88  LQADLTGIPVLRAQSWDMSALGVGIVAGHSVGVWSCDKWKHHATHAD 228
           L   L+ IP+      D S  G+GI+ G   G+  CD+WK   T+ +
Sbjct: 29  LLVKLSDIPI--GSCGDESYFGLGIMDG---GLEECDRWKLEVTNPE 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,253,637
Number of Sequences: 27780
Number of extensions: 228917
Number of successful extensions: 558
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)