Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0453
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...    43   2e-04
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    29   1.7  
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    29   1.7  
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    29   2.3  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    29   2.3  
At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containi...    29   3.0  
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina...    28   5.3  

>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +1

Query: 46  VDGKMSSNDRGGVQLQADLTGIPVLRAQSWDMSALGVGIVAGHSVGVW-SCDKWK--HHA 216
           VDG  ++N+   +Q+QADL G PV+R    + +ALG    AG +VG W   D ++    A
Sbjct: 427 VDGGATANNLL-MQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFWKEADIFESGEKA 485

Query: 217 THADTFLPXXXXXXXXXXXXKWKMAVQRSLGWA 315
            ++  F P             W  AV+R+   A
Sbjct: 486 KNSKVFRPAMEEGIRKKKVASWCKAVERTFDLA 518


>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 97  PPVAALPHDRSRTSSRQPWS 38
           PP  A PH+ SRTS   PWS
Sbjct: 459 PPQNAPPHNPSRTSELSPWS 478


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 97  PPVAALPHDRSRTSSRQPWS 38
           PP  A PH+ SRTS   PWS
Sbjct: 459 PPQNAPPHNPSRTSELSPWS 478


>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 31   CRSSTVDGKMSSNDRGGV-QLQADLTGIP--VLRAQSW 135
            C+SS  DG +  ND  G+  + + ++GIP  +L +Q W
Sbjct: 905  CKSSGTDGTLDGNDAFGLYSMGSHISGIPEDMLASQDW 942


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 31   CRSSTVDGKMSSNDRGGV-QLQADLTGIP--VLRAQSW 135
            C+SS  DG +  ND  G+  + + ++GIP  +L +Q W
Sbjct: 905  CKSSGTDGTLDGNDAFGLYSMGSHISGIPEDMLASQDW 942


>At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containing
           protein similar to BPM [Hordeum vulgare] GI:20513851
          Length = 968

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 16  RAGCPCRSSTVDGKMSSNDRGGVQLQADLTGIPVLRAQSWDMSALGVGIVAGHSVGV 186
           R   PC +    G+MSSND+     Q+   G+     +S D+     G+    SVG+
Sbjct: 269 RVPSPCLTPIGSGRMSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSCSVGL 325


>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 769

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 190 SCDKWKHHATHADT--FLPXXXXXXXXXXXXKWKMAVQRSLGWATTKKSITMTEERY 354
           S  KW  H  + DT  FL             +   AV RSL   TT   +T T ERY
Sbjct: 201 SLKKWHRHFGYDDTGNFL-LSHNSTINIDDLRTSKAVSRSLSELTTTSGLTRTSERY 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,585,701
Number of Sequences: 28952
Number of extensions: 214961
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)