Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0450
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   118   5e-28
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   2.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.7  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   3.5  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   4.7  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   8.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  118 bits (283), Expect = 5e-28
 Identities = 52/78 (66%), Positives = 63/78 (80%)
 Frame = +3

Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 356
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 357 KTTAKGLFKILEKYRPET 410
           K TA  +FK+L KYRPET
Sbjct: 84  KNTATQVFKLLNKYRPET 101


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 212 YWSGHSANS*LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 367
           Y+  +  N  + Q+   A  YP+ +     SAS  S+P+     P T +  S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 291 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 392
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 275 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 364
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 363 TAKGLFKILEKYR 401
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 392  LQNLEKALSCSLVQCLGKLVDRRGHFQTTLKYSL 291
            L+N ++ L  +L + L  +V++  H  TTL Y+L
Sbjct: 1690 LKNSKQELLAALRKLLSTMVEQNDHTCTTLIYTL 1723


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 327  EGALSDDAEVQPSGAGCGYTWAILQIWTSHELAECPDQ*QSSLASSRREDSR 172
            +GAL   A V   G   G+ +++    T H L +     Q +L+SS+R  +R
Sbjct: 1538 KGALGIGARVGGLGQMPGWWYSVESSATPHLLKQFEQACQQALSSSQRTRAR 1589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,414
Number of Sequences: 5004
Number of extensions: 28200
Number of successful extensions: 82
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)