Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0450
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   118   2e-27
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           118   2e-27
At3g60270.1 68416.m06737 uclacyanin, putative similar to uclacya...    27   6.6  
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    26   8.7  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  118 bits (284), Expect = 2e-27
 Identities = 51/77 (66%), Positives = 63/77 (81%)
 Frame = +3

Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 356
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 357 KTTAKGLFKILEKYRPE 407
           K  A  LFKIL KYRPE
Sbjct: 80  KNLATSLFKILLKYRPE 96


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  118 bits (283), Expect = 2e-27
 Identities = 50/77 (64%), Positives = 63/77 (81%)
 Frame = +3

Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 356
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 357 KTTAKGLFKILEKYRPE 407
           K  A  LFK+L KYRPE
Sbjct: 81  KNLATSLFKVLLKYRPE 97


>At3g60270.1 68416.m06737 uclacyanin, putative similar to uclacyanin
           3 GI:3395770 from [Arabidopsis thaliana]; contains Pfam
           profile PF02298: Plastocyanin-like domain
          Length = 187

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 206 LCYWSGHSANS*LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYP 346
           LC   GH +    + +  +A V   P P     + S SAPS  P  P
Sbjct: 103 LCLTPGHCSLGMKLAVQVLAAVSLEPPPSPSAPSPSPSAPSPSPSAP 149


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 293 GCTSASSESAPSDQPIYPDTGQDYS*GPFQDFGE 394
           GC +ASS S+ S+      TG D++   FQ + E
Sbjct: 154 GCDTASSGSSDSEGKFGFQTGPDFTLEEFQKYDE 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,602,645
Number of Sequences: 28952
Number of extensions: 154917
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)