Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0449
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    82   6e-17
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    29   0.73 
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    26   3.9  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.8  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   9.0  

>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
 Frame = +1

Query: 148 QFIDKFKQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPNISEELFVD 327
           QF    ++ DA+ KT+ED R+K              +I + + E   Y       E+ V+
Sbjct: 2   QFRSPLRRFDAFQKTVEDARIKTASGGLITLVSGLIVIFIVLMEWINYRRVIAVHEIIVN 61

Query: 328 TSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAIEEPKKE 507
            S G ++ IN +I  P I C  L +D +D SGE    +   + K RL   G  I     +
Sbjct: 62  PSHGDRMEINFNITFPRIPCQILTVDVLDVSGEFQRDIHHTVSKTRLSPSGEII---SVD 118

Query: 508 EISTASTLKQNNSEIATLTCGSCYGAA----FNESQCCNTCD 621
           ++   +  +Q+ S+     CG CYGAA     +   CCNTCD
Sbjct: 119 DLDIGN--QQSISDDGAAECGDCYGAADFAPEDTPGCCNTCD 158


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +1

Query: 256 MILLFMSELHTYLSPNISEELFVDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHL 435
           +++L  S+   Y+     +ELF+  S    + +N+DI +  + C+ L +D +D + +  L
Sbjct: 42  IVVLVFSQCVQYIRGIREQELFIYDSVSELMDLNIDITI-AMPCSNLRIDVVDRTKDLVL 100

Query: 436 QME 444
             E
Sbjct: 101 ATE 103


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 265 LFMSELHTYLSPNISEELFVDTSRGHKLRINLDIIVPT 378
           L MSE+ T  +  +   +    +RGH+ RIN +++V T
Sbjct: 79  LDMSEMSTVPASTLVTYVQTFANRGHQARINNNVVVGT 116


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +1

Query: 262 LLFMSELHTYLSPNISEELFVDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQM 441
           ++ ++ +H   +    E+LF D      L +NLD     +   Y +++       Q    
Sbjct: 11  IIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVK-GYALIEYATLEQAQKAVD 69

Query: 442 EQNIH--KRRLDLDGNAIEEPKKEEISTASTLKQNNS 546
           E+N+     +L++D   +E P++    + ST  ++ S
Sbjct: 70  EKNLSLLDEKLEVDFAFLEPPERAPRPSISTRSRSQS 106


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 424 EQHLQMEQNIHKRRLDLDGNAIEEPKKEEISTAS 525
           E+    EQN  + RL +     E  KK+E+S+ S
Sbjct: 183 EKEKNAEQNKRRERLSISHIVTELAKKDEVSSES 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,249
Number of Sequences: 5004
Number of extensions: 40377
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)