Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0449
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374... 129 2e-30
04_04_0097 - 22782031-22782122,22782504-22782570,22782769-227828... 94 7e-20
03_02_0828 - 11592080-11592171,11592288-11592354,11592748-115928... 58 4e-09
07_01_0234 + 1715338-1718233,1718351-1718760 29 4.0
06_01_0454 - 3234331-3236299,3237254-3238074 28 5.3
>05_05_0301 +
23936126-23936267,23937101-23937174,23937338-23937421,
23937502-23937582,23938304-23938384,23938503-23938595,
23939094-23939270,23939838-23939927,23940859-23940925,
23941218-23941309
Length = 326
Score = 129 bits (311), Expect = 2e-30
Identities = 68/166 (40%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Frame = +1
Query: 142 MTQFIDKFKQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPNISEELF 321
M F+ K K LDAY K EDF + M+LLF+SE +Y +L
Sbjct: 1 MEGFLQKLKGLDAYPKVNEDFYKRTLSGGVVTVVASVVMLLLFVSETRSYFYSATETKLV 60
Query: 322 VDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAIEEPK 501
VDTSRG +LR+N D+ P++ C L +D MD SGEQH + +I KRRLD GN I E +
Sbjct: 61 VDTSRGERLRVNFDVTFPSVPCTLLSVDTMDISGEQHHDIRHDIEKRRLDAHGNVI-EAR 119
Query: 502 KEEISTA---STLKQNNSEIA--TLTCGSCYGAAFNESQCCNTCDD 624
KE I A S L+++ ++ CG+CYGA ++ QCCN+C++
Sbjct: 120 KEGIGGAKIESPLQKHGGRLSKGEEYCGTCYGAEESDEQCCNSCEE 165
>04_04_0097 -
22782031-22782122,22782504-22782570,22782769-22782861,
22782981-22783034,22783163-22783214,22783346-22783413,
22783532-22783711,22783843-22783935,22784585-22784665,
22785011-22785091,22785204-22785331,22786502-22786643
Length = 376
Score = 94.3 bits (224), Expect = 7e-20
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Frame = +1
Query: 142 MTQFIDKFKQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPNISEELF 321
M + K + LDAY K EDF + M+LLF+SEL L+
Sbjct: 1 MEGLLSKLRSLDAYPKVNEDFYSRTLSGGIITLASSVVMLLLFVSELRHTLTYTF----- 55
Query: 322 VDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAI--EE 495
G L++ D+ P + C+ + LDAMD SG++HL ++ +I K+R+D+ GN I ++
Sbjct: 56 -----GMILKMQFDVTFPALQCSIISLDAMDISGQEHLDVKHDIFKQRIDVHGNVIATKQ 110
Query: 496 PKKEEISTASTLKQNNSEIA--TLTCGSCYGAAFNESQCCNTCDD 624
+ L+++ + CGSCYGA ++ QCCN+C+D
Sbjct: 111 DAVGGMKVEQPLQRHGGRLEHNETYCGSCYGAEESDEQCCNSCED 155
>03_02_0828 -
11592080-11592171,11592288-11592354,11592748-11592837,
11592914-11592967,11593109-11593169,11593252-11593319,
11593513-11593596,11594257-11594349,11594513-11594593,
11594665-11594793,11595193-11595273,11595401-11595484,
11596816-11596842,11597027-11597094,11597481-11597619
Length = 405
Score = 58.4 bits (135), Expect = 4e-09
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Frame = +1
Query: 157 DKFKQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPN------ISEEL 318
+K + LDAY K EDF + ++LLF+SE+ ++ I +
Sbjct: 5 NKLRSLDAYPKVNEDFYSRTLSGGLITIASSLAILLLFLSEILGVITCQSVGICFILQGC 64
Query: 319 F-VDTSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAIEE 495
F VD + L D+ P + C+ + +D MD SGEQH + +I K+R+D GN IE
Sbjct: 65 FCVDLGCIYILLQIFDVTFPALPCSLVAVDTMDVSGEQHYDIRHDIIKKRIDNLGNVIES 124
Query: 496 PK 501
K
Sbjct: 125 RK 126
Score = 39.5 bits (88), Expect = 0.002
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 565 CGSCYGAAFNESQCCNTCDD 624
CGSCYG+ ++ QCCN+C+D
Sbjct: 195 CGSCYGSEESDDQCCNSCED 214
>07_01_0234 + 1715338-1718233,1718351-1718760
Length = 1101
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +1
Query: 268 FMSELHTYLSPNISEELFVDTSRGHKLRINLDIIVPTISC-NYLVL--DAMDSSGEQHLQ 438
F L Y+ N S +L + + G++L + + +S N L L + M + + +
Sbjct: 445 FTGNLPDYMG-NFSNQLVIFFAFGNQLTGGIPASLSNLSALNLLDLSNNQMSNIIPESIM 503
Query: 439 MEQNIHKRRLDLDGNAIEEPKKEEISTASTLKQ 537
M +N+ R LD GN++ P EIS ++L++
Sbjct: 504 MLKNL--RMLDFSGNSLSGPIPTEISALNSLER 534
>06_01_0454 - 3234331-3236299,3237254-3238074
Length = 929
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +1
Query: 328 TSRGHKLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDGNAIEE 495
T R H + +N I+ ++ N+L L +D SG LQ RRL L GN +E
Sbjct: 492 TCRVHDVILNF-IVSKSVEENFLFL--LDPSGLVPLQHSNYCKVRRLSLQGNYCQE 544
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,026,299
Number of Sequences: 37544
Number of extensions: 229222
Number of successful extensions: 493
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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