Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0449
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical pr...   108   3e-24
AF101315-1|AAC69225.2|  369|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine re...    27   8.3  

>Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical
           protein K09E9.2 protein.
          Length = 380

 Score =  108 bits (260), Expect = 3e-24
 Identities = 58/155 (37%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
 Frame = +1

Query: 166 KQLDAYAKTLEDFRVKXXXXXXXXXXXXXXMILLFMSELHTYLSPNISEELFVD-TSRGH 342
           K  DAY K ++DFRVK              ++LL + E   +LS  + E LFVD T+   
Sbjct: 8   KHFDAYRKPMDDFRVKTLSGGLVTLIATIAIVLLIVLETKQFLSTEVLEHLFVDSTTSDE 67

Query: 343 KLRINLDIIVPTISCNYLVLDAMDSSGEQHLQMEQNIHKRRLDLDG-NAIEEPKKEEIST 519
           ++ I  DI    + CN++ +D MD S E    +  +I++ RLD +G N  E  +K EI+ 
Sbjct: 68  RVHIEFDITFTKLPCNFITVDVMDVSSEAQENINDDIYRLRLDPEGRNISESAQKIEINQ 127

Query: 520 ASTLKQNNSEIATLTCGSCYGAAFNESQCCNTCDD 624
             T  +    I  + CGSCYGAA  +  CCNTCDD
Sbjct: 128 NKTSVETTDVIQEVKCGSCYGAA-ADGICCNTCDD 161


>AF101315-1|AAC69225.2|  369|Caenorhabditis elegans Hypothetical
           protein T22H9.4 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
 Frame = +1

Query: 439 MEQNIHKRRLDLDGNAIE-----EPKKEEISTASTLKQNNS 546
           ++++I KR++ + GN +E      PKKE  +TAS+   ++S
Sbjct: 175 LDRHIKKRKMSIKGNTVEAIAPKSPKKEGSTTASSSSLSSS 215


>Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical
           protein T05A10.3 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 424 EQHLQMEQNIHKRRLDLDGNAIEEPKKEEISTASTLKQNNSE 549
           +Q +++E+   +RRL+ +  A EE K+EE +     ++   E
Sbjct: 283 QQRIELERREEERRLESERRAEEERKREEEAKLQEQRRREQE 324


>AC006730-2|AAK72091.1|  322|Caenorhabditis elegans Serpentine
           receptor, class i protein34 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 216 SFNSKIFQSLSIGV*LFEFVNELRHVENGQF 124
           S  S++F SL + V LF FV  +  V+NGQF
Sbjct: 241 SLVSQMFASLMLFVPLFIFVMLITGVDNGQF 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,574
Number of Sequences: 27780
Number of extensions: 221346
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)