Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0448
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.40
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 1.6
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 27 2.1
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 27 2.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 2.1
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 27 2.8
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.7
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 4.9
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 6.4
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 25 8.5
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 29.5 bits (63), Expect = 0.40
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +3
Query: 342 IKSVPAHIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENL 473
+ + AH+V+ + + +L+NN ++LN +++SK+ Y L ENL
Sbjct: 1667 VSDLTAHLVKKIEEPDLENNVKLILN--LILSKD-YGFLLKENL 1707
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +3
Query: 303 RRLRGAKIMDHFTIKSVPAHIVQSLVK 383
++++G +M+ + K VP H+VQS +
Sbjct: 1185 KKIKGIALMNFYKPKKVPIHVVQSFCR 1211
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 381 KNNLDNNPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYK 530
+NN +N P +LN ++SK+ ++Q D V+ +KL +K
Sbjct: 418 ENNPNNIPEGILNVFPILSKDSHLQENQPTDILTDESVIAEDVKLEQVFK 467
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 186 NKLQFKLWVLRFCLKIV 236
NKLQF++ +LR CL+IV
Sbjct: 115 NKLQFQISLLRCCLRIV 131
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 582 IYVNVLWCCAVFYVCACFYSLCSILKKA 499
+ +N+ C F+ A F++ CS LKK+
Sbjct: 212 LIINIEEACTFFFESAHFFAQCSYLKKS 239
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +3
Query: 414 LNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYKNKHKRKKQHNTKEHLHK 581
L KC+ I +Q I L S+ +Y + + SLK + Y+N ++ + + +L +
Sbjct: 137 LEKCLTIPLDQNILLVSDTRWYYAQDSILKSLK-TLGYQNVYESHLKERIEPNLEE 191
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 442 SLEITMHLFKTTAGLLSKLFFTSDCTMCAGTLLIVK*SIILA 317
+ +I++HL T L+ LFF+ ++ G L+V SI ++
Sbjct: 60 NFDISVHLMPTVYTLIDYLFFSPPFSLSIGPSLLVYLSIAVS 101
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 343 LKAYQRTSCNHL*KIIWIIIQLSF*TNALLSLKNSIYS 456
LK YQ+T K W I S +N +LKN+I++
Sbjct: 340 LKRYQKTKTKTRAKSTWKIANKSVYSNLAPTLKNTIHA 377
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 555 AVFYVCACFYSLCSILKKAKEHLCLR 478
++FY C +SL S LK + CL+
Sbjct: 212 SIFYKIGCLFSLSSFLKICPRNDCLQ 237
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 174 RNMINKLQFKLWVLRFCLKIVYPKFNFYTFLVFLTIKHRIWYERRLRGAKIMDHFTIK 347
R I + + W + ++ +P F FY V IK R+ + GAK+ FT +
Sbjct: 109 RTSIRVSKLRYWQRDY--RLAFPNFIFYFDNVDEEIKRRVTQKINNLGAKVATLFTFE 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,642
Number of Sequences: 5004
Number of extensions: 44367
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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