Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0448
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    29   2.1  
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    29   3.7  
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012...    28   5.0  
03_01_0569 + 4204326-4204443,4204539-4204948,4205062-4205203,420...    28   5.0  
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310...    28   6.5  
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237...    28   6.5  

>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
            33817363-33817539,33817638-33817964,33818067-33818192,
            33818518-33818622,33818815-33820125,33820221-33820382,
            33820416-33820517,33820549-33821272,33821358-33821451,
            33821824-33821986
          Length = 1285

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +3

Query: 414  LNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYKNKHKRKKQHN 560
            LNK +    ++ ++  +  +F+  + +L  S+KL  + K KHKR K+H+
Sbjct: 1029 LNKKMNCKSKRQVKYPAVRMFFGPKQLLLASVKL--HKKRKHKRSKKHH 1075


>03_01_0085 +
           690618-691012,691114-691193,691775-691959,692363-693320,
           693391-693518,693951-694010,694113-694163,694704-694821,
           694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 555 AVFYVC-ACFYSLCSILKKAKEHLCLRKTSSH*PTVYTVL 439
           AV Y+C  C YSLC +  K  +   +R T     T Y+ +
Sbjct: 169 AVHYMCYTCTYSLCKVCIKQGKFFSVRGTKGFCDTCYSTI 208


>07_03_0517 +
           19000050-19000427,19000539-19000766,19001142-19001221,
           19001222-19001441,19001571-19001713,19002023-19002160,
           19002295-19002376
          Length = 422

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 24  NNTYRY*YEEFHCVKIFL*VDEKMCITTL*SIQICSCYIFFLCSFK 161
           NN +    EE +C+K    +D K C     + QI S   F +C+F+
Sbjct: 182 NNNWDVALEELNCLKEM--IDSKQCFVCHINYQILSQLNFSICAFR 225


>03_01_0569 +
           4204326-4204443,4204539-4204948,4205062-4205203,
           4205312-4205337
          Length = 231

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 264 LVFLTIKHRIWYERRLRGAKIMDHFTIKSVPAHIVQSLVKN 386
           LV L  +   W + RL G +  DH  + S  AH    L +N
Sbjct: 10  LVLLRFQALNWVQTRLHGTRKQDHTAVSSRRAHTSGDLHRN 50


>03_01_0401 -
           3108477-3108689,3108787-3108933,3109022-3109234,
           3109321-3109938,3110045-3110584,3110941-3111041,
           3111208-3111325,3111450-3111535,3111888-3112002
          Length = 716

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +3

Query: 294 WYERRLRGAKIMDHFTIKSVPAHIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQL 458
           W + +  G+  +    +K VP +I++ ++  N +N P         ++ +Q IQ+
Sbjct: 552 WQQDKWNGSLSLKWHIVKDVPNNILKHIILENNENKPVTNSRDTQEVNLDQGIQM 606


>02_05_0701 +
           31022485-31022648,31023569-31023611,31023712-31023777,
           31024007-31024062,31024091-31024190,31024290-31024472,
           31024953-31025001,31025089-31025169,31025209-31025268,
           31025394-31025514,31025612-31025693,31025783-31025868,
           31026011-31026111,31026246-31026387,31026488-31026638,
           31026710-31026937
          Length = 570

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 333 HFTIKSVPAHIVQSLVK-NNLDN-NPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWLS 506
           H  +K +      SL +  NL+N N  +V ++  +I K   + +   NL   +RGVLWLS
Sbjct: 70  HDELKPLTKSFTDSLSELGNLNNVNDDIVSSENTIIRKVDSLVVLG-NLTEFERGVLWLS 128

Query: 507 LKLS 518
             L+
Sbjct: 129 ENLT 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,376,349
Number of Sequences: 37544
Number of extensions: 227872
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)